PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0044s0048.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 594aa    MW: 65004.8 Da    PI: 4.6541
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0044s0048.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS335.41e-1022295935374
                 GRAS   5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                          +l+ A+ v+s + e+a +lL++l + +s++gdp++R+a++f+e L +r ++   +  + lp+ +t   +s+e + ++k++++++P+ kf+
  Kalax.0044s0048.2.p 229 VLDYARIVDS-EPERAASLLTQLLKSVSETGDPIERVAFHFAEVLYERATH---RPGNFLPACST---TSEEFTLFYKALNDACPYSKFA 311
                          5566776655.7889999********************************9...33444544444...4899****************** PP

                 GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                          hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p +++i g+ +p+ g     +l++tg+rL++fA+ l+++fef++ 
  Kalax.0044s0048.2.p 312 HLTANQAILEAMEKAQMIHIVDFGIVQGVQWAALLQALATRTTGKPsRIKISGIPAPALGpsPVAALSATGKRLTEFAKLLDLNFEFEP- 400
                          ******************************************666659*********99999999************************. PP

                 GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v   l++l+ ++++v+++E++aV+++lql++llde+    +   + L+l +slsP +v++ e ea +n+ +F++r+ +al yy+alf+sl
  Kalax.0044s0048.2.p 401 VLAPLSELNESSFKVDQDESVAVSFMLQLYNLLDETPMAVE---SALRLARSLSPCIVTLGEYEARLNRVPFVDRVKNALTYYTALFESL 487
                          799******************************99888777...9********************************************* PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv 359
                          e +l r+s +ri +E+ ll+++i  v+  e+   +rer+e    W+  +e+aGF pv+ls++a +qak ll +++ +  y++ e+  +++
  Kalax.0044s0048.2.p 488 EPSLERDSADRIQLEKSLLRQRIAGVIGPEQPGvKRERMEDRDGWQLLMESAGFVPVKLSHYAISQAKILLWNYNyNSHYSIVESPPAFL 577
                          ******************************99889****************************************9999******99999 PP

                 GRAS 360 .lgWkdrpLvsvSaWr 374
                           l W + p++svS+Wr
  Kalax.0044s0048.2.p 578 sLAWGELPVLSVSSWR 593
                          9**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.567199571IPR005202Transcription factor GRAS
PfamPF035143.5E-100229593IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MAYLCGDSGN LMAIAQQIQQ KEQQENYQQQ PIHHQPDYLQ HQLAGANPFS VTGTWTASAS  60
QLGYGLAGSG FPDQFPGNDA ASEGVFPFSN PMEFRFTEFD SADWIMEGLI GGGEPSSTAG  120
YEAWQSQPDF SNLYAADPFA VPPSGDLSRL VFSAPLKTDG LVQPQEPICA PPPAPPSPLR  180
PPHVDEEVAV APPPPAPKPQ KPEISKANTR LLDAKPSSPQ PPPPLLMAVL DYARIVDSEP  240
ERAASLLTQL LKSVSETGDP IERVAFHFAE VLYERATHRP GNFLPACSTT SEEFTLFYKA  300
LNDACPYSKF AHLTANQAIL EAMEKAQMIH IVDFGIVQGV QWAALLQALA TRTTGKPSRI  360
KISGIPAPAL GPSPVAALSA TGKRLTEFAK LLDLNFEFEP VLAPLSELNE SSFKVDQDES  420
VAVSFMLQLY NLLDETPMAV ESALRLARSL SPCIVTLGEY EARLNRVPFV DRVKNALTYY  480
TALFESLEPS LERDSADRIQ LEKSLLRQRI AGVIGPEQPG VKRERMEDRD GWQLLMESAG  540
FVPVKLSHYA ISQAKILLWN YNYNSHYSIV ESPPAFLSLA WGELPVLSVS SWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1402245933375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889931.10.0SCARECROW-LIKE protein 7 isoform X2
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A438CHG10.0A0A438CHG1_VITVI; Scarecrow-like protein 4
STRINGGorai.003G015400.10.0(Gossypium raimondii)
STRINGEOX911130.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-156GRAS family protein