PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0043s0094.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 683aa MW: 79355.2 Da PI: 6.8863

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0043s0094.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.1	3e-23	70	160	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 Y+++A++ GFs+rk++s++s++ g +++r++vC+++g+++++kk+++++ r+r++ r+gC+ak+ ++ke ++w+v+++++ HnHe Kalax.0043s0094.1.p 70 HYSNFARKNGFSIRKARSTESHNLG-VYRRDYVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKMYLTKEIvdgVAQWYVSQFSNIHNHE 158 69*****************7777.**************************************998766789*********** PP FAR1 89 la 90 l Kalax.0043s0094.1.p 159 LL 160 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-21	70	160	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.1E-23	292	384	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.507	563	595	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.4E-7	565	591	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.6E-4	570	597	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence Send to blast
MKPSNNIWIR RQQCPCGDWK CYIRYEGDDH TASGSQLVKM ETYSSHSSYA PSFTPYVGQI 60 YKTDTDAFQH YSNFARKNGF SIRKARSTES HNLGVYRRDY VCYRSGFNQP RKKANVEHPR 120 ERKSVRCGCD AKMYLTKEIV DGVAQWYVSQ FSNIHNHELL EDDQVRLLPA YRKIQEADQE 180 RILLLSKAGF PVNRIVKVLE LEKGVQPGQL PFIEKDVRNF VRTCKKTIQE NDTLLTEKRE 240 NDTLEFLEAC KATAEKDFEF VYDYSTDENG KVENIAWSYG QSVCAYTMFG DVVFFDTAYH 300 SITYGLLLGT WFGMDNHGKP ILLGCVLLQD ETSRSFAWAF QSFHRFMRGR QPQTIVTDMD 360 TAIIHAVANE LPNTKHVICL WHIISKLSSW FTVPLGLHYG DFRSEFEVTC FLERIEEFEH 420 QWNHLVTQYE LGSDKHMVLL YTYREYWAFC YINNYFLARM VTKEFLKSMS TFLKKILSSQ 480 SCLQGFFEEI AAAVSIDYQK NDDIQYTYIK TCMPVEEHAR SILTPYAFSV LQNELVLSMQ 540 YEITDMPDGS YHLRHYKGLD KALVIRAEPI QCSCKAFDYS GILCRHCLRI LVLKNCFQLP 600 ETYFLPRWRS DSNFYSVDNQ NQQTETDERV QAFHTLSASL LSESIMTRER FNYVRRELGG 660 LLENVRNMPA IIEAAVLGSL AG*

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence Send to blast

MKPSNNIWIR RQQCPCGDWK CYIRYEGDDH TASGSQLVKM ETYSSHSSYA PSFTPYVGQI  60
YKTDTDAFQH YSNFARKNGF SIRKARSTES HNLGVYRRDY VCYRSGFNQP RKKANVEHPR  120
ERKSVRCGCD AKMYLTKEIV DGVAQWYVSQ FSNIHNHELL EDDQVRLLPA YRKIQEADQE  180
RILLLSKAGF PVNRIVKVLE LEKGVQPGQL PFIEKDVRNF VRTCKKTIQE NDTLLTEKRE  240
NDTLEFLEAC KATAEKDFEF VYDYSTDENG KVENIAWSYG QSVCAYTMFG DVVFFDTAYH  300
SITYGLLLGT WFGMDNHGKP ILLGCVLLQD ETSRSFAWAF QSFHRFMRGR QPQTIVTDMD  360
TAIIHAVANE LPNTKHVICL WHIISKLSSW FTVPLGLHYG DFRSEFEVTC FLERIEEFEH  420
QWNHLVTQYE LGSDKHMVLL YTYREYWAFC YINNYFLARM VTKEFLKSMS TFLKKILSSQ  480
SCLQGFFEEI AAAVSIDYQK NDDIQYTYIK TCMPVEEHAR SILTPYAFSV LQNELVLSMQ  540
YEITDMPDGS YHLRHYKGLD KALVIRAEPI QCSCKAFDYS GILCRHCLRI LVLKNCFQLP  600
ETYFLPRWRS DSNFYSVDNQ NQQTETDERV QAFHTLSASL LSESIMTRER FNYVRRELGG  660
LLENVRNMPA IIEAAVLGSL AG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657467.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_010657468.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_010657469.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019078798.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019078799.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019078800.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021291814.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021291815.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021291816.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021291817.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021291818.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_021291819.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	F6HHP5	0.0	F6HHP5_VITVI; Uncharacterized protein
STRING	VIT_12s0057g00960.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Kalax.0043s0094.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]