PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0042s0076.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 351aa    MW: 39887.4 Da    PI: 6.7353
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0042s0076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.7e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+ eEd +l+ ++ q+G+g +W + ++++g++R++k+c++rw++yl
  Kalax.0042s0076.1.p 14 KGPWSHEEDAKLKAYIDQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding35.22.9e-1171111446
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          + ++Ed l+  + +  G++ W+ Ia++++ gRt++++k++w++
  Kalax.0042s0076.1.p  71 FAEDEDNLICSLYATIGSR-WSIIAARLP-GRTDNDIKNYWNT 111
                          5689***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.255962IPR017930Myb domain
SuperFamilySSF466897.94E-2611109IPR009057Homeodomain-like
SMARTSM007171.5E-111364IPR001005SANT/Myb domain
PfamPF002491.8E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-231569IPR009057Homeodomain-like
CDDcd001677.70E-81662No hitNo description
PROSITE profilePS5129420.62463117IPR017930Myb domain
SMARTSM007172.0E-1067115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2270117IPR009057Homeodomain-like
PfamPF002492.1E-1071111IPR001005SANT/Myb domain
CDDcd001675.44E-773113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSHE EDAKLKAYID QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FAEDEDNLIC SLYATIGSRW SIIAARLPGR TDNDIKNYWN TKLKRKLLGK  120
QRKENARRES LLKQQVEKEE SKYQGPQLYM VHANQHEFMS VHYNTQECFS VSSNMLGMPY  180
PNQQVYTYDD RQVDYTYDDR QVDDTNGWAT AINNHQYIQE HLHGEAYNPN INLEYYNSNS  240
GLLSNLESEA EDADPNFLVD GVPINFSSMK KQWFEEFLFR SNQLGFMNMV TGSVSSSSGG  300
EVGTIPKEST TTTWGDRAAT TLMPSSSFQL ADFQQWGSDN NGIHIASIQH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028082936.17e-86transcription factor RAX3
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-73myb domain protein 84