PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0042s0027.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 872aa MW: 96345.8 Da PI: 9.3241 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.4 | 8.2e-06 | 168 | 187 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr+f G C++G++C+F H+ Kalax.0042s0027.4.p 168 CRDFTS-GRCRRGSNCPFLHS 187 777777.*************8 PP | |||||||
2 | zf-CCCH | 19.2 | 2.2e-06 | 259 | 279 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ffa+ G C+ G +C+F+H Kalax.0042s0027.4.p 259 PCTFFAA-GNCRNGKSCRFSHH 279 7999999.*************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0019 | 162 | 188 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.521 | 162 | 189 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.11E-5 | 164 | 187 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 167 | 187 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0035 | 254 | 280 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.286 | 254 | 281 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-5 | 257 | 279 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 872 aa Download sequence Send to blast |
MDENGRKRTS KWDLKDGQRN LEDNGRENLR SGNYHASSNE YRSYSGRHSA PHMAENDVKY 60 PTDTKDVRSK YEVATSVREH ASGNRGTWRD NSLDRGNRGF SEAGTDWDED GGRRDFVRSP 120 RSSWKRPLRS TSRGRSRSRS RSPIRAYRLE SGVDARPRSK AEVPIQTCRD FTSGRCRRGS 180 NCPFLHSSTH NYEDRRYDFE HREESVRGGK YSQFNASDGC YNDYNKETSE PKREYDRNSR 240 GTSFNHGAER DPRRSADIPC TFFAAGNCRN GKSCRFSHHI SSSSSSGGRT HDGRWRTNHS 300 PEKAGQMDRG TKFSDHVDPH TADYGKEGRS RTNRSPDRVD QGVKSSETAD PNLIEYGKES 360 HGKVVSPQPR STSASMNSRW GNNIETSYVP PGGPTIMDKV VEVEANQSSQ WKTENPGSIT 420 RASEMKGVDN WLGDKMSPEW NPKVSSVRTV AVEEPAYAIQ TSESVNHNVP PQASQLTHYV 480 SSVTPDVLEK PNFQQGFNSI NDAPTALSYD RNTGSNVVMN FNSSFLPNNC AQPSSHSGPN 540 EAPGNSNALG QGQFSLTTSH PGNENASAIR NSTANFDMYS ITSNCEDPKV SEAISGATPA 600 SNMVSQAQLA QLTDLSASLA HLLGKGQQLP QFYAALNPPN PVASLEISNG IVSQFPVESV 660 LPHPHIGSDK PYGPVCDNAL QIQPNISTMP TQYPLNPGVV RTMEDVKQEV PSRELNAGEA 720 YKNGHAEGNL SQKPDTDSKS NKKPKSMLDE SSKGKDKHAK PREGSPLENM DGVGKGDGGK 780 KVKDTKALRD FKHGLVNFVK ELLKPAWKDG QIDKEGFKTI VKKVTDKVTA TIQEANIPQT 840 PEKVNHYLSA SKPKLTKLVQ AYVDRHHKKQ T* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 140 | RGRSRSRSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 4e-08 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0042s0027.4.p |