PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0038s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 532aa    MW: 60087.2 Da    PI: 7.8983
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0038s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2852.2e-871615294374
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPi 90 
                           L++ Ae v+ +++++a++lL+    l+s +g+++qRl+ yf eAL++r+ r+  + ++   +++ + +  + +++++ +    +   P+
  Kalax.0038s0007.1.p 161 CLFSTAESVALEQFARATKLLNYCDVLSSCNGNTVQRLVRYFSEALRERIDRQRGNFSSEGLSKQPKIDVKDASVSSHPViltCHRKIPF 250
                          6999************************************************777777766666655444333333333333488999** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                           +  hl+  qaI e v+ ++rvH++Df++  G+ W  ++qaLasR+ +p   l++T+vgs  + sk e+e tg+rL+ fA+ l++pf fn
  Kalax.0038s0007.1.p 251 TRTLHLAGIQAIIENVADAKRVHVVDFGVRFGVCWTIFMQALASREFPPLeILKLTAVGS-GTMSKSEIEDTGKRLSAFAQGLNIPFTFN 339
                          **********************************************665549********.667************************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          + ++ ++ +l+ e ++v+++Ea+a   ++ l ++l    +++++ ++v+++++s++P+++v++e+ea++n++ F +rf+eal yysa+fd
  Kalax.0038s0007.1.p 340 IAMVGDMLNLSEELFEVEHDEAVAFYASYLLRTML----CVPDRLEHVMRVIRSINPRIMVMIESEANTNAPCFGRRFTEALFYYSACFD 425
                          *9899************************999998....77777778******************************************* PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          +le+ + + + +ri++E    +++i+n++a+eg++r+ rh +l+ Wr  + ++GF++ +ls +   +a+++l+++ +   +++ e +sl+
  Kalax.0038s0007.1.p 426 CLETCMTSSDPDRIFIESLHCRQAIRNILATEGEMRTTRHVKLSVWRTFFARFGFSKTRLSRSSLHEANSMLKEFTMY-CNLDMEGKSLT 514
                          ****************************************************************************77.9********** PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          +gWk+ p+vsvSaW+
  Kalax.0038s0007.1.p 515 IGWKGTPMVSVSAWK 529
                          **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.2132510IPR005202Transcription factor GRAS
PfamPF035147.4E-85161529IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MYEIRTRNLV QILIPCAFSK IINRKPQLTH TVVLLHLCNI MKRYKKGDKS GKNPNVVEEG  60
DVEFISFLMS EIPESCRNQL LRSQEDIVSQ PGIDPISVKM DDKSLTAVEV FRVAGERFIR  120
EKFIQSSSSG EGDPCRFRHS ADVYYSGSSA EQVNDAELAG CLFSTAESVA LEQFARATKL  180
LNYCDVLSSC NGNTVQRLVR YFSEALRERI DRQRGNFSSE GLSKQPKIDV KDASVSSHPV  240
ILTCHRKIPF TRTLHLAGIQ AIIENVADAK RVHVVDFGVR FGVCWTIFMQ ALASREFPPL  300
EILKLTAVGS GTMSKSEIED TGKRLSAFAQ GLNIPFTFNI AMVGDMLNLS EELFEVEHDE  360
AVAFYASYLL RTMLCVPDRL EHVMRVIRSI NPRIMVMIES EANTNAPCFG RRFTEALFYY  420
SACFDCLETC MTSSDPDRIF IESLHCRQAI RNILATEGEM RTTRHVKLSV WRTFFARFGF  480
SKTRLSRSSL HEANSMLKEF TMYCNLDMEG KSLTIGWKGT PMVSVSAWKF V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3919252937375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811562.11e-153PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2I4DWN41e-151A0A2I4DWN4_JUGRE; DELLA protein RGL1-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-51RGA-like 1