PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0038s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 616aa    MW: 68403.7 Da    PI: 5.2036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0038s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS269.88.9e-832466136374
                 GRAS   6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kalppsetseknsseelaalkl......fsevs 88 
                          + +Ae v+ +++e+a++lL++   l+++dg+++qR++ yf eAL++r+ r + +++ k l   ++     +ee+++++       f+  +
  Kalax.0038s0006.1.p 246 FLAAEGVAFQQFERATRLLNHCDMLVAQDGSTVQRVVYYFSEALRERIDRISGNCSlKGLGKLQDF---NIEEAMIMSPypfclsFHRQT 332
                          568999999*****************************************4444440444322222...2333333321234568***** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                          P+ +  +++a q Ile v ++++vH+iDf+i+ G+QW  L+qaLa+R       l+iT+v+     sk+++e tg+rLa+fA++l+++f 
  Kalax.0038s0006.1.p 333 PFSQAWQFAAVQSILENVGHAKKVHVIDFGIKCGVQWTILMQALATRGaLTLELLKITAVST---ASKQSVEDTGSRLANFAHSLNLTFA 419
                          ***********************************************9455679********...58*********************** PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          f++++++++ +l+ + ++++ +E+ a+ + + l  +l+++  le+    ++++++s+++ ++v++e eadhns+ F++rf+eal y+s+ 
  Kalax.0038s0006.1.p 420 FSIVMVDDMLNLHEDLIELEDDEVAAIYVPFVLRAFLSKPDRLEH----MMSVIRSIQSCMIVMIEVEADHNSPAFANRFTEALFYFSSY 505
                          *************************************66666666....***************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                          fd+l++ ++  + +r+ +E +++++ i+n++a+ega+r+ r  + e Wr+ ++++ + +++ls++   qa+l+l++++ +   ++e + +
  Kalax.0038s0006.1.p 506 FDCLATCMGDSNPNRKIIESVYFSQGIRNIIATEGAARTIRSVKIEVWRAFFTRFQLVEAELSSSSLYQARLILKEFNcGSCCTLEMHGK 595
                          ******************************************************************************9999******** PP

                 GRAS 357 slvlgWkdrpLvsvSaWr 374
                          s++  W++ p++s+SaW+
  Kalax.0038s0006.1.p 596 SFIREWNGTPIMSLSAWK 613
                          *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.997215592IPR005202Transcription factor GRAS
PfamPF035143.1E-80246613IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MHFLCDFVDS ICVYGFTTTI CSRQTLFGSG VGVGYSSSDY IQNVGVGSKG SENRRDGFEG  60
NKEFSFVFDS LGMEFYDSGM ENENTGKGGT GIISSAEQRS ASQIGDCGDF GNVRMSGNSS  120
CVKIFEEDIA SMETISGGGI DILEHEKERG QRSGFASLEL LKNYGSGFKR LHREVISQPS  180
LVPPCRKVVR EDLSTAEIFR VAGEMFIQSS SQGVSDRSVG SHLTDLHFCS ISEEQIKDVQ  240
LAVSIFLAAE GVAFQQFERA TRLLNHCDML VAQDGSTVQR VVYYFSEALR ERIDRISGNC  300
SLKGLGKLQD FNIEEAMIMS PYPFCLSFHR QTPFSQAWQF AAVQSILENV GHAKKVHVID  360
FGIKCGVQWT ILMQALATRG ALTLELLKIT AVSTASKQSV EDTGSRLANF AHSLNLTFAF  420
SIVMVDDMLN LHEDLIELED DEVAAIYVPF VLRAFLSKPD RLEHMMSVIR SIQSCMIVMI  480
EVEADHNSPA FANRFTEALF YFSSYFDCLA TCMGDSNPNR KIIESVYFSQ GIRNIIATEG  540
AARTIRSVKI EVWRAFFTRF QLVEAELSSS SLYQARLILK EFNCGSCCTL EMHGKSFIRE  600
WNGTPIMSLS AWKFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-3227561337375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811562.11e-177PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2I4DWN41e-175A0A2I4DWN4_JUGRE; DELLA protein RGL1-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-47GRAS family protein