PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0037s0096.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | Dof | ||||||||
Protein Properties | Length: 293aa MW: 31696.6 Da PI: 4.1613 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.8 | 2e-37 | 14 | 70 | 4 | 60 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 a +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ Kalax.0037s0096.1.p 14 MAPNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRR 70 5679**************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-22 | 1 | 61 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.1E-32 | 16 | 70 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.584 | 16 | 70 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 18 | 54 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MDRRWMMMKS SPEMAPNCPR CASSNTKFCY YNNYSLSQPR YFCKGCRRYW TKGGSLRNVP 60 VGGGCRKSRR GRSSSRPGDT ISSYTSSRTD GGGRSGDVLV MRQHQDAASS NRGSSGPADI 120 DMAAVFAKFL DPISETELRD QEETDQTGDD GNPFFELASS LGSSNEEAGD GFLMDDSENE 180 AGLFGQVVGA EFDPLAAVGD ENLEGSYDGS FGLEYEDMFS SDQVLAAGPE AVMWPANNYG 240 TDAFCEWQQG ELELPPFSGN YKQMKGGSSG NGLVDDNNWT VGSCLDVTSF EV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM430517 | 2e-35 | AM430517.1 Vitis vinifera contig VV78X165735.2, whole genome shotgun sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 1e-29 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0037s0096.1.p |