PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0036s0037.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 841aa    MW: 91766.8 Da    PI: 6.6458
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0036s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-182683457
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Kalax.0036s0037.1.p 26 YVRYTAEQVEALERVYAECPKPSSLRRQQLVRECpilaNIEPKQIKVWFQNRRCREKQ 83
                         5789****************************************************97 PP
2START145.16.5e-461643692204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv++  +++g++++ +f+ s++++  a+ra+g+v  +++   +e+l+d++ W +++++ e+   + ++  g
  Kalax.0036s0037.1.p 164 IAEETLAEFLSKATGTAVDWVQMHGMKPGPDSVGIFAISQSSNAVAARACGLVGLEPP-KIAEILKDRPSWFRDCRSLEVFTSLPTAngG 252
                          68999*****************************************************.7777777777***************99999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                           ++l ++++ a++ l+p Rd +++Ry+  l+ g++v++++S++ +   p+   ++vRae+lpSg+li+++++g+s +++v+h +l+ +++
  Kalax.0036s0037.1.p 253 SIELVYTQMFAPTILAPaRDLWTLRYTTLLENGSLVVCERSLSGTGTAPNaGGNFVRAEMLPSGYLIRSCDGGGSIIHIVDHLNLEPWSV 342
                          *******************************************9999998899************************************* PP

                          HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 178 hwllrslvksglaegaktwvatlqrqc 204
                          +++lr+l+ s+   ++k++ a+l++ +
  Kalax.0036s0037.1.p 343 PEVLRPLYTSSKLVAQKMTIAALHYVR 369
                          ***********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4832084IPR001356Homeobox domain
SuperFamilySSF466895.99E-172186IPR009057Homeodomain-like
SMARTSM003895.6E-162288IPR001356Homeobox domain
CDDcd000863.15E-162585No hitNo description
PfamPF000463.5E-162683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-182783IPR009057Homeodomain-like
CDDcd146862.64E-677116No hitNo description
PROSITE profilePS5084822.766154380IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-16162345IPR023393START-like domain
SMARTSM002347.2E-35163371IPR002913START domain
SuperFamilySSF559617.55E-31164350No hitNo description
PfamPF018521.7E-43164369IPR002913START domain
PfamPF086701.2E-47696839IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MAMVVSQRRE ISSGSISKHL DATGKYVRYT AEQVEALERV YAECPKPSSL RRQQLVRECP  60
ILANIEPKQI KVWFQNRRCR EKQRNESSRL QAVNRKLTAM NKLLMEENDR LQKQVSHLVY  120
ENGYMRQQLQ SATGAAADGS CESVVTTPRQ SLRDATNPAG LLAIAEETLA EFLSKATGTA  180
VDWVQMHGMK PGPDSVGIFA ISQSSNAVAA RACGLVGLEP PKIAEILKDR PSWFRDCRSL  240
EVFTSLPTAN GGSIELVYTQ MFAPTILAPA RDLWTLRYTT LLENGSLVVC ERSLSGTGTA  300
PNAGGNFVRA EMLPSGYLIR SCDGGGSIIH IVDHLNLEPW SVPEVLRPLY TSSKLVAQKM  360
TIAALHYVRQ VAHETSGEVI YGFGRQPAVL RTFSQRLSRG FNDAINGFSD AGWSVMNCDS  420
ADDVIISVNP TKNLNSQCSS ASSFQTVGGI LCAKASMLLR NVPPAVLVRF LREHRSEWAD  480
YNVDAYTAAS VKSNSLTFPG MRPMSFSGSQ IMMPLGHTIE NEEMLEVVRI EGQSLSPEDG  540
YMSRDIHLLQ ICGGTAENSM GACAELVFAP ISEMFPDDVP LLPSGFRIIP LDSKSADIQD  600
QLKGHRTLDL TSSLEVSPVT SQAPGGTPAQ ETRSVLTIAF QFPFESHLQD SIATMARQYV  660
RSVITSVQRV ATAITPTGIS PGAGPKISPD SPEALTLAQW ICHSYSYQIG ADLLRAESLA  720
GDLVLKSLWH HPDAILCCSI KATPVLIFAN KAGLDMLETT LAALQDVSLD KIFDESGRKA  780
LCSDFAKIMQ QGFAYLPSGI CMSTMGRHIS YNQSVAWKVL AGDDQTVHCL AFSFVNWSFM  840
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529946.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLB9SVC70.0B9SVC7_RICCO; DNA binding protein, putative
STRINGXP_002529946.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]