PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0036s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 327aa    MW: 36315.8 Da    PI: 4.5666
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0036s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.4e-1988140456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++++ +q++ Le+ Fe ++++  +++ +LAk++gL+ rqV +WFqNrRa++k
  Kalax.0036s0018.1.p  88 KRRLSVDQVQFLERSFEAENKLEPDRKIQLAKEVGLQPRQVAIWFQNRRARWK 140
                          568999**********************************************9 PP
2HD-ZIP_I/II129.21.7e-4187176291
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkrrls +qv++LE+sFe+e+kLep+rK +la+e+glqprqva+WFqnrRAR+kt+q+Ekdy++L+++y++lk+  ++L +e+e+L++e+
  Kalax.0036s0018.1.p  87 KKRRLSVDQVQFLERSFEAENKLEPDRKIQLAKEVGLQPRQVAIWFQNRRARWKTRQMEKDYDTLRASYNSLKSGYDALVQENENLKAEV 176
                          9**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-1874144IPR009057Homeodomain-like
PROSITE profilePS5007116.68282142IPR001356Homeobox domain
SMARTSM003891.2E-1885146IPR001356Homeobox domain
CDDcd000865.91E-1887143No hitNo description
PfamPF000465.4E-1688140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-1989149IPR009057Homeodomain-like
PRINTSPR000312.8E-5113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000312.8E-5122138IPR000047Helix-turn-helix motif
PfamPF021835.3E-17143183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGTGGGRVFM TGNLTGCSES MTPASNPPKP ALFLSGPSRF LGSGSAMVSF EDVNGSKGRG  60
ARSFFTAFDQ DDNGDEDYEE YLNQGGKKRR LSVDQVQFLE RSFEAENKLE PDRKIQLAKE  120
VGLQPRQVAI WFQNRRARWK TRQMEKDYDT LRASYNSLKS GYDALVQENE NLKAEVGTLS  180
EKLASKMNPL QNAQLSETSK HSAALPDNPI SNSASEAEDS EFPLAERKPL DDFTSAKSDV  240
FQSDSPRYTD GVYSPRLEHV DSSYMLEPDN NSDLSEDDSL PKAYLPSSLF MLPPLEHHDY  300
TDPSAATSST FGSAHEDHQP FWSWSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028710.11e-101PREDICTED: homeobox-leucine zipper protein HAT5-like
RefseqXP_011028711.11e-101PREDICTED: homeobox-leucine zipper protein HAT5-like
RefseqXP_021287102.11e-101homeobox-leucine zipper protein HAT5-like
TrEMBLA0A061FXE82e-99A0A061FXE8_THECC; Homeobox protein, putative isoform 2
STRINGEOY217131e-100(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-43homeobox 1