PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0035s0078.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 320aa    MW: 35654.2 Da    PI: 8.1205
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0035s0078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.4e-15731551399
                          TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          s+++++p  f++++ g     + ++tl +  gr+W++ +  ++ ++++ ++ GWkeF++an L+  D++ F+++g s+f   v+vf k
  Kalax.0035s0078.1.p  73 SDQMRVPPAFVRRFpG-G--FPEKITLDSCAGREWRIDVAKSRDDNSVCFRCGWKEFAEANSLQYADVLFFSFVGGSKF--DVRVFGK 155
                          6789**********54.4..4457***************99999999***************************98999..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-2159162IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-2060158IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.49361156IPR003340B3 DNA binding domain
CDDcd100174.54E-2063153No hitNo description
SMARTSM010194.5E-1064156IPR003340B3 DNA binding domain
PfamPF023621.0E-1373153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MHHNQIRSIK AFEEHKMDII SAGFSTACYC VLHSPANMTF LRADSEDNGH HHQPGLKTPE  60
LTSFYKIMIC DFSDQMRVPP AFVRRFPGGF PEKITLDSCA GREWRIDVAK SRDDNSVCFR  120
CGWKEFAEAN SLQYADVLFF SFVGGSKFDV RVFGKSGCQK RINPALETPS DPPSVKLEPD  180
SGCSSHQPDF SSRDCDTDVK ELRASTPGPK PSPGKAFDQA TDSNAYTKSF RVRLSRSSCQ  240
RGYLNVPMNF VQRCPELGSG SRQVKLSVPS SGRTWLTNYT TRLEKCVEGD GRGETYSVEV  300
SKLLWWIIIC EKGTSASLN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.18e-15B3 family protein