PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0033s0144.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 254aa    MW: 27644 Da    PI: 8.5669
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0033s0144.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-18180213134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +Cg+ kTp+WR gpdg+ktLCnaCG++y++ +
  Kalax.0033s0144.3.p 180 CKHCGSEKTPQWRAGPDGPKTLCNACGVRYKSGR 213
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.793174210IPR000679Zinc finger, GATA-type
SMARTSM004019.4E-15174224IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-14177237No hitNo description
Gene3DG3DSA:3.30.50.104.1E-14178211IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.69E-13179227No hitNo description
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
PfamPF003202.9E-16180214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGFFDTAPSA CFIDDLLNFN IDDTDRDKAN GSKNPKSLSP PNTFFPLPES EEEEELEWLS  60
NKDVFPSVET FVDVIPVEPS TAVLKHVSPV SVLENSISSF GSNSSNDSNA VITTCCIGRG  120
LTPPIRRPRS RGSQKRRRGG FVDISSQQWF IYCSSIHTNK TGNNAAKALG TASGITSRKC  180
KHCGSEKTPQ WRAGPDGPKT LCNACGVRYK SGRLCPEYRP ASSPTFSSAV HSNSHRKIVE  240
MKKMKQHDGQ PCG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022722855.11e-61GATA transcription factor 1-like
RefseqXP_022722856.11e-61GATA transcription factor 1-like
RefseqXP_022722857.11e-61GATA transcription factor 1-like
RefseqXP_027118962.12e-61GATA transcription factor 1-like
SwissprotQ8LAU91e-54GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A438HVL88e-60A0A438HVL8_VITVI; GATA transcription factor 1
STRINGVIT_05s0051g00450.t012e-60(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.15e-48GATA transcription factor 1