PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0033s0144.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 254aa MW: 27644 Da PI: 8.5669 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.5 | 1.8e-18 | 180 | 213 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cg+ kTp+WR gpdg+ktLCnaCG++y++ + Kalax.0033s0144.1.p 180 CKHCGSEKTPQWRAGPDGPKTLCNACGVRYKSGR 213 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.793 | 174 | 210 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.4E-15 | 174 | 224 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.81E-14 | 177 | 237 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.1E-14 | 178 | 211 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.69E-13 | 179 | 227 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 180 | 205 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.9E-16 | 180 | 214 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGFFDTAPSA CFIDDLLNFN IDDTDRDKAN GSKNPKSLSP PNTFFPLPES EEEEELEWLS 60 NKDVFPSVET FVDVIPVEPS TAVLKHVSPV SVLENSISSF GSNSSNDSNA VITTCCIGRG 120 LTPPIRRPRS RGSQKRRRGG FVDISSQQWF IYCSSIHTNK TGNNAAKALG TASGITSRKC 180 KHCGSEKTPQ WRAGPDGPKT LCNACGVRYK SGRLCPEYRP ASSPTFSSAV HSNSHRKIVE 240 MKKMKQHDGQ PCG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022722855.1 | 1e-61 | GATA transcription factor 1-like | ||||
Refseq | XP_022722856.1 | 1e-61 | GATA transcription factor 1-like | ||||
Refseq | XP_022722857.1 | 1e-61 | GATA transcription factor 1-like | ||||
Refseq | XP_027118962.1 | 2e-61 | GATA transcription factor 1-like | ||||
Swissprot | Q8LAU9 | 1e-54 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A438HVL8 | 8e-60 | A0A438HVL8_VITVI; GATA transcription factor 1 | ||||
STRING | VIT_05s0051g00450.t01 | 2e-60 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 5e-48 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0033s0144.1.p |