PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0029s0063.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SRS

Protein Properties

Length: 222aa MW: 24538.3 Da PI: 8.5903

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0029s0063.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	170.9	6.4e-53	12	152	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 s +++C+dCGnqak+dC+++RCRtCCksrgf C+thvkstWvpa++rr+ ++q++ + +a+s ++ +++ +l + + + Kalax.0029s0063.1.p 12 SSRMACHDCGNQAKRDCVYMRCRTCCKSRGFRCQTHVKSTWVPAYRRRHSHTQHHHHQLL------DASSTGQQ----QHAVQLLNPRGP 91 56899*****************************************975544443222......22222222....345566677777 PP DUF702 93 saeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153 + +s e e +P+e+ s+a+frcv v+s +d e++aYq+avsigGh+fkGiLydqG+e Kalax.0029s0063.1.p 92 NPTSGLE-EGLMFPPEITSSAMFRCVVVRSSEDnVIEQYAYQAAVSIGGHLFKGILYDQGPE 152 7766644.4556*************999945688********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.2E-52	15	152	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.8E-27	17	58	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-21	103	151	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MRQGVGARSS SSSRMACHDC GNQAKRDCVY MRCRTCCKSR GFRCQTHVKS TWVPAYRRRH 60 SHTQHHHHQL LDASSTGQQQ HAVQLLNPRG PNPTSGLEEG LMFPPEITSS AMFRCVVVRS 120 SEDNVIEQYA YQAAVSIGGH LFKGILYDQG PELSPTPQHQ NPTTAPPPSH HHHHQYLGNE 180 GPSSSTAPPP LEAPATAFAT QQRPDYNPSP FQTGTHVFFH Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010647684.2	2e-51	PREDICTED: protein SHORT INTERNODES
Swissprot	Q9LQZ5	2e-44	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
Swissprot	Q9XGX0	2e-44	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A438I8Z3	9e-50	A0A438I8Z3_VITVI; Protein SHORT INTERNODES
STRING	VIT_03s0038g00310.t01	3e-47	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-43	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Kalax.0029s0063.1.p

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]