PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0028s0071.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 278aa    MW: 31038.6 Da    PI: 5.2319
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0028s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.9e-141461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd  l+++ + +G g W  +++  g++R++k+c++rw++yl
  Kalax.0028s0071.1.p 14 KGAWTAEEDRMLAEYMEAHGEGKWPNVPNVTGLKRCGKSCRLRWLNYL 61
                         79********************************************97 PP
2Myb_DNA-binding551.8e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ +++E++l+v+++k+lG++ W++Ia +++ gRt++++k++w++yl
  Kalax.0028s0071.1.p  67 RGNISPDEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTYL 112
                          7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.503961IPR017930Myb domain
SuperFamilySSF466891.2E-2812108IPR009057Homeodomain-like
SMARTSM007173.0E-121363IPR001005SANT/Myb domain
PfamPF002492.8E-131461IPR001005SANT/Myb domain
CDDcd001677.67E-91661No hitNo description
PROSITE profilePS5129426.70862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2465116IPR009057Homeodomain-like
SMARTSM007172.7E-1666114IPR001005SANT/Myb domain
PfamPF002491.0E-1567112IPR001005SANT/Myb domain
CDDcd001671.00E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRRPCCAKE GLNKGAWTAE EDRMLAEYME AHGEGKWPNV PNVTGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEDLIVR LHKLLGNRWS LIAGRLPGRT DNEVKNYWNT YLSKKIGSSN  120
KNNTKKKQQQ PPFHVAQQTS MNHQVLLEEE KSSLVVTASE DQLKNSNYML NTNSSQKVGS  180
GSNEDCLTLE EIIEFAEFGG GKTQQNNIVG ADPGSSSTVQ HDSFCPLGPE SNLAWPGHKD  240
GQWDDWLLDA MAADAEDWLP DCDVRDFLNS VETDSTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047497.12e-69PREDICTED: myb-related protein 330
TrEMBLA0A059CLX45e-68A0A059CLX4_EUCGR; Uncharacterized protein
STRINGXP_010047497.19e-69(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-57myb domain protein 3