PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0026s0083.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 521aa MW: 57705.2 Da PI: 7.7883

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0026s0083.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.2	3.9e-20	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR t+ ql++Lee++e ++yp+ ++r +A+k+gLte+qV+ WF+ rR k+k+ Kalax.0026s0083.2.p 24 RKRKLKTPAQLQALEEYYEDHKYPTDSMRSAIAEKIGLTEKQVSGWFCHRRLKDKR 79 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-20	5	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-17	19	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.665	20	80	IPR001356	Homeobox domain
SMART	SM00389	1.1E-20	22	84	IPR001356	Homeobox domain
CDD	cd00086	4.40E-18	24	79	No hit	No description
Pfam	PF00046	1.3E-17	24	79	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MEDSDADSLD GRAEGDKTPV ETSRKRKLKT PAQLQALEEY YEDHKYPTDS MRSAIAEKIG 60 LTEKQVSGWF CHRRLKDKRL SKDETLGSGR MERSSGVIQE HFSGPGQDSC GSTKPGEYKN 120 ADMRDVESQL LAGQELSPMK LAYHNRMNTG SLDVDMDDTS SENSSPLRPS HLPQRDVPQM 180 WENLRYSIPK GPAVPSSPKV AIGGQLRRPS GYLKIKPKAE HPAITAVKRQ LGMNFRVDGP 240 PLGIEFQPPP VDAFQAGPKD TATGPRDGIG SLVPNISGSS YHGAQFEEGP RVNHGSELFY 300 SHHQSRPKYS VSDNIKLDHG WGPSPNLDKE YAEEAYGSKR NLFNEEKYGS KGLRIQPISS 360 VPFQPSHNIS GVNPMIAQRS KYLKNKLSNT KSRQREPHNT FERRLCAREP EIEKHHSVSS 420 NISERPNLIP VTATPEYKLM DKQLVAARND PVEYPNPNSE QIGVYNNELK EKKARFGYSQ 480 PDFGKTMSLA INRGKGAAGA IPSSFSEDET GETSSSGDDE *

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MEDSDADSLD GRAEGDKTPV ETSRKRKLKT PAQLQALEEY YEDHKYPTDS MRSAIAEKIG  60
LTEKQVSGWF CHRRLKDKRL SKDETLGSGR MERSSGVIQE HFSGPGQDSC GSTKPGEYKN  120
ADMRDVESQL LAGQELSPMK LAYHNRMNTG SLDVDMDDTS SENSSPLRPS HLPQRDVPQM  180
WENLRYSIPK GPAVPSSPKV AIGGQLRRPS GYLKIKPKAE HPAITAVKRQ LGMNFRVDGP  240
PLGIEFQPPP VDAFQAGPKD TATGPRDGIG SLVPNISGSS YHGAQFEEGP RVNHGSELFY  300
SHHQSRPKYS VSDNIKLDHG WGPSPNLDKE YAEEAYGSKR NLFNEEKYGS KGLRIQPISS  360
VPFQPSHNIS GVNPMIAQRS KYLKNKLSNT KSRQREPHNT FERRLCAREP EIEKHHSVSS  420
NISERPNLIP VTATPEYKLM DKQLVAARND PVEYPNPNSE QIGVYNNELK EKKARFGYSQ  480
PDFGKTMSLA INRGKGAAGA IPSSFSEDET GETSSSGDDE *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	6e-58	HB-other family protein

Link Out ? help Back to Top
Phytozome	Kalax.0026s0083.2.p