PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0025s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 370aa    MW: 42463 Da    PI: 8.2219
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0025s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.3e-066788223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         +C+ Cg  F+ + +L++H+ +H
  Kalax.0025s0007.1.p 67 TCQECGANFKKPAYLRQHMLSH 88
                         6*******************99 PP
2zf-C2H217.31.3e-0594118123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          + Cp   C+ s++rk++L+rH+r H
  Kalax.0025s0007.1.p  94 FMCPvdGCHSSYRRKDHLTRHLRQH 118
                          78*********************98 PP
3zf-C2H216.72e-05160184123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          ++C+   Cgk F+  s L++H  +H
  Kalax.0025s0007.1.p 160 HVCQedGCGKAFRFASKLQKHELSH 184
                          789999***************9998 PP
4zf-C2H215.16.6e-05251275223
                          EET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                          kC+   C  +Fs++snL++H +  H
  Kalax.0025s0007.1.p 251 KCNfeGCLHTFSNRSNLQQHVKAaH 275
                          699999**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355742346IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.5172351IPR007087Zinc finger, C2H2
SMARTSM003550.0596688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.7786693IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-76687IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576679.61E-1180120No hitNo description
Gene3DG3DSA:3.30.160.603.7E-1388120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002394118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1894123IPR007087Zinc finger, C2H2
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
SuperFamilySSF576674.6E-5104152No hitNo description
SMARTSM0035543123146IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556123151IPR007087Zinc finger, C2H2
SuperFamilySSF576672.09E-5157186No hitNo description
Gene3DG3DSA:3.30.160.601.4E-7157184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.023160184IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45160189IPR007087Zinc finger, C2H2
PROSITE patternPS000280162184IPR007087Zinc finger, C2H2
SMARTSM003555.2192217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194217IPR007087Zinc finger, C2H2
SMARTSM0035511220241IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-8231272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.06E-7231287No hitNo description
PROSITE profilePS501579.827250280IPR007087Zinc finger, C2H2
SMARTSM003550.0073250275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280252275IPR007087Zinc finger, C2H2
SMARTSM003555281306IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280283307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEETQQQGEE SAKQPSFRDI RRYYCEYCGV CRSKKSLISM HIIKFHQKEM EENDGEDNIE  60
ETAKTNTCQE CGANFKKPAY LRQHMLSHSV ERPFMCPVDG CHSSYRRKDH LTRHLRQHEG  120
NVFKCSNEKC ARQFVSQANL TRHKCHEPET PFSGCASKQH VCQEDGCGKA FRFASKLQKH  180
ELSHVKLETT EAICLETGCL KYFSNEACLK AHMDACHQHI NCEVCGSKQL KKNLKRHLRT  240
HEPEHANEPV KCNFEGCLHT FSNRSNLQQH VKAAHLNIKR FACGYADCGM KFAYKHVRDN  300
HEKTSHHVYT EGDFLESREQ CRVTPCGGRK RECPSIVSVL VKRITPLPKD SDSTASSMYS  360
AWMNVTNSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A3e-15552122155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-15552122155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278827.11e-154PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-114TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1U7ZTZ81e-150A0A1U7ZTZ8_NELNU; transcription factor IIIA
STRINGXP_010251838.11e-151(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-117transcription factor IIIA