PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0024s0161.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 300aa MW: 32360.4 Da PI: 6.9743 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.3 | 7.7e-10 | 148 | 192 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Kalax.0024s0161.1.p 148 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 192 99***********************55......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.4E-15 | 141 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.12 | 143 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-15 | 145 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-7 | 148 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.5E-11 | 149 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MANNHHHHHH HSQAPTADDF LEHLLGIPSY AASSDSGLGG NDVGLGSHMM LQLSSGADGS 60 GHVGQGFHGS AFPLGLSLDQ GKPGGFLKLD EASGTVKRFV EESGDGRAPS VQNTFHAQPM 120 QNTMPAAPHP PAMRPRVRAR RGQATDPHSI AERLRRERIA ERIRALQELV PSVNKTDRAA 180 MLDEIVDYVK FLRLQVKVLS MSRLGGAGAV APLVTDIPLS SVEEESGGER RNQPAWEKWS 240 NDGTEQQVAK LMEENVGAAM QFLQSKALCI MPINLASIIY HTPQPDSSTL VKPERHPPS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 157 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018812362.1 | 1e-148 | PREDICTED: transcription factor UNE12-like | ||||
Swissprot | O22768 | 1e-121 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A2I4DYZ2 | 1e-146 | A0A2I4DYZ2_JUGRE; transcription factor UNE12-like | ||||
STRING | VIT_07s0141g00220.t01 | 1e-143 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.2 | 9e-95 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0024s0161.1.p |
Publications ? help Back to Top | |||
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