PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0024s0106.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 358aa MW: 38860.8 Da PI: 7.0332 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57 | 2.6e-18 | 264 | 297 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C tkTp+WR gp g+ktLCnaCG+++++ + Kalax.0024s0106.1.p 264 CQHCEITKTPQWRAGPMGPKTLCNACGVRFKSGR 297 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.8E-75 | 5 | 354 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.213 | 258 | 294 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.3E-16 | 258 | 308 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 262 | 295 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 2.04E-14 | 262 | 321 | No hit | No description |
CDD | cd00202 | 1.67E-14 | 263 | 320 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 264 | 289 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.4E-16 | 264 | 297 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MAGAGPIFAD DLDCVNFFDQ IDDLLDFPDE SCKNNGESGI LCEDFKDFPS IWTQSDPFPA 60 SESVFSGSNS NSTSDLSAEL SVPYEDIAEL EWLSTFVEDS FSAGNSLTID VTNSVPNKVV 120 SPSPNQFQTS SPVSVLESSS SSYGGGKVMP VIPFKPAAMT GGRCGRARSK RPRPSTFNPR 180 PSMQLMSPKA SFTKTATPFE GVRTGCAEFN SFSELGHSLK IPKSSASMEC KKKKKMKLSV 240 PHPAEVNQNE NPNPLSPQVA VRKCQHCEIT KTPQWRAGPM GPKTLCNACG VRFKSGRLFP 300 EYRPAASPTF VPSVHSNSHK KVLEMRVKTC NRTGSPPSFE TLQTELVPNE NHVVDYV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 173 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018844833.1 | 1e-109 | PREDICTED: GATA transcription factor 8-like | ||||
Swissprot | Q9SV30 | 2e-40 | GATA8_ARATH; GATA transcription factor 8 | ||||
TrEMBL | A0A2I4GLQ5 | 1e-108 | A0A2I4GLQ5_JUGRE; GATA transcription factor | ||||
STRING | POPTR_0010s23010.1 | 1e-106 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 2e-42 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0024s0106.1.p |
Publications ? help Back to Top | |||
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