PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0023s0075.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family G2-like
Protein Properties Length: 422aa    MW: 45173.8 Da    PI: 7.2976
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0023s0075.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.93.4e-26161214156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k +++WtpeLH+rFv+aveqLG  ekA+P++ile+m+ +gLt+++++SHLQkYR++
  Kalax.0023s0075.1.p 161 KVKVDWTPELHKRFVQAVEQLG--EKAVPSRILEVMGADGLTRHNIASHLQKYRSH 214
                          5689*****************4..88****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.395158216IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-25159217IPR009057Homeodomain-like
SuperFamilySSF466896.45E-15160217IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24161214IPR006447Myb domain, plants
PfamPF002492.2E-10164212IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MLVASSLRDS TSKNNDTEET IVGVDMDDFP GGSLLEYSID FDELFAGLDE DPDALPDLEI  60
LGDYYSVSAG SGDERGQSSD DGNDVVSGSA GSPFGSGSGL DTSSVCSPSE GAAVVDQAEE  120
VGAKKDGKEH QGHFGKVKKL AASAAKAGRS SKTGRGDGKR KVKVDWTPEL HKRFVQAVEQ  180
LGEKAVPSRI LEVMGADGLT RHNIASHLQK YRSHRKHLIA REAEAASWNQ RRHLYGGARA  240
GGVGKRAGVS PWLVPTIGFP PPMPQPLHRP LGPLHVWGHP SGGHSQSNTM WPKHIVPHHH  300
LRPPHLQPRP VWAPPHPHHL PYGPSQGMPC YPSPPQRFVA PPVPGIPHRA MYKNDPRAAA  360
GQPPRLHPPL DSTPSNETID AALEDVLAKP WLPLPIGLKP PAIDTVVGEL QRHGVPQIPP  420
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-14166216657Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132777.11e-108hypothetical protein PHAVU_011G124200g
TrEMBLV7AKX51e-107V7AKX5_PHAVU; Uncharacterized protein
STRINGXP_007132777.11e-108(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-58GBF's pro-rich region-interacting factor 1