PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0023s0027.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 396aa MW: 43861.2 Da PI: 5.6947

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0023s0027.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.6	9e-08	142	162	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C+ Gd C FaHg Kalax.0023s0027.3.p 142 ACPDFRK-GNCRKGDACEFAHG 162 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	5.1E-6	135	164	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.08	137	164	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-6	137	163	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.7E-6	142	162	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.944	172	196	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	172	195	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MMLGDYKFPS TSSSLHVPPW SSLAVDDPFS PFPANMNYVS AHGSPASFSE SAYASLRRYL 60 PSNDVGIDGD VELLDSLGVD EEEEEEEFPL DAYSCDQFRM FDFKVRRCVR AKSHDWTECP 120 YAHPGEKARR RDPRKYNYAG TACPDFRKGN CRKGDACEFA HGVFECWLHP NRYRTQPCKD 180 GVNCRRRVCF FAHTPDQLRV VTESSPRSVV DSYDGSPLRQ ALEAAVTKSA LPLMLSISPP 240 ATPTADSPPV SPLTRSLSRS LGSSSVNELV VSLRQLQLNK QVKSMPRASY NLPGYGGSPR 300 GSSLLKPGFF SLPNTPTGIQ TRGAAGRHLE LWERSVEEED LEPAMERVES GRCLRAKMLE 360 KLRNDNSLMD PAAECSSTPD PDPDPDVGWV SELLQ*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MMLGDYKFPS TSSSLHVPPW SSLAVDDPFS PFPANMNYVS AHGSPASFSE SAYASLRRYL  60
PSNDVGIDGD VELLDSLGVD EEEEEEEFPL DAYSCDQFRM FDFKVRRCVR AKSHDWTECP  120
YAHPGEKARR RDPRKYNYAG TACPDFRKGN CRKGDACEFA HGVFECWLHP NRYRTQPCKD  180
GVNCRRRVCF FAHTPDQLRV VTESSPRSVV DSYDGSPLRQ ALEAAVTKSA LPLMLSISPP  240
ATPTADSPPV SPLTRSLSRS LGSSSVNELV VSLRQLQLNK QVKSMPRASY NLPGYGGSPR  300
GSSLLKPGFF SLPNTPTGIQ TRGAAGRHLE LWERSVEEED LEPAMERVES GRCLRAKMLE  360
KLRNDNSLMD PAAECSSTPD PDPDPDVGWV SELLQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021597894.1	1e-152	zinc finger CCCH domain-containing protein 20-like
Swissprot	Q9M0G2	1e-120	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A2C9UAC7	1e-150	A0A2C9UAC7_MANES; Uncharacterized protein
STRING	cassava4.1_009450m	1e-151	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-104	C3H family protein

Link Out ? help Back to Top
Phytozome	Kalax.0023s0027.3.p

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]