PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0022s0120.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 317aa MW: 35543.4 Da PI: 5.3369 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.1 | 2e-13 | 23 | 68 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd++l + ++ +G++ +W+ +a+++ +t qc+ rw++yl Kalax.0022s0120.5.p 23 VWTQEEDDILREQIRIYGTDnNWAIVASKFS-DKTTRQCRRRWYTYL 68 6******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 45.1 | 2.3e-14 | 74 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g WT+eEd ll + +++G++ W+ Ia+++ gRt++ +k+r+ + Kalax.0022s0120.5.p 74 KGGWTPEEDALLCESQRKYGNK-WTEIAKMVS-GRTDNAVKNRFST 117 688*******************.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.831 | 16 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-13 | 20 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 24 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.30E-12 | 24 | 68 | No hit | No description |
Pfam | PF13921 | 5.2E-15 | 24 | 85 | No hit | No description |
SuperFamily | SSF46689 | 2.13E-26 | 48 | 129 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.651 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-14 | 73 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.31E-10 | 77 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 77 | 122 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MKKRSDSNTT EGANKLKERH IVVWTQEEDD ILREQIRIYG TDNNWAIVAS KFSDKTTRQC 60 RRRWYTYLNS DFKKGGWTPE EDALLCESQR KYGNKWTEIA KMVSGRTDNA VKNRFSTLCK 120 KKAKREALAE EDSTSLSSVG KKRAWLKNQP HKTGTEENQV PYKKIHRIRI SVPAESCNRE 180 KVVPGDYPLG EHTQIIPDLC EEPSGSSDYS TGSTLLSHVT EGTPTNQPMD ISELNQDSGS 240 EIRISLGQKE SEESMTMFGS LSYQDGFQSS QEPTSEEVFS AESAVEFGSP LQVIPLFPDE 300 SAELPSPVFS ESASHA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 24 | 123 | 10 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2C9WM65 | 2e-83 | A0A2C9WM65_MANES; Uncharacterized protein | ||||
STRING | XP_008221735.1 | 6e-73 | (Prunus mume) | ||||
STRING | PGSC0003DMT400065797 | 3e-73 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14350.2 | 1e-58 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0022s0120.5.p |