PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0021s0130.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 278aa    MW: 31467.5 Da    PI: 7.693
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0021s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.9e-18191225135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l
  Kalax.0021s0130.1.p 191 CSHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 225
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.8E-17185235IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.438185221IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.9E-14189223IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.19E-14189249No hitNo description
CDDcd002027.57E-14190237No hitNo description
PROSITE patternPS003440191216IPR000679Zinc finger, GATA-type
PfamPF003208.3E-16191225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDEFFRVDDL LNFSNDDHVF SSITTDHSDH HHHHHLHQNQ QLNSSSEHMV DYQLKNYYDR  60
NNNLPRCNNS SFSSVSGPAA AAAFGAQHFS YDFTDQLCVP NDDVAELEWL SNFVDDSFND  120
FNSNALTGTL MSQSHTSIPS AARSKRSRQR TWKASTSLIS SSTAPQIDRS RTKRQEFVDD  180
SSSSSGGLRR CSHCASEKTP QWRTGPMGPK TLCNACGVRY KSGRLVPEYR PAASPTFVLT  240
QHSNSHRKVM ELRRQKEVTI KQQQGHVYRH SHDFEVC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149KRSRQR
2168173RSRTKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277959.18e-82PREDICTED: GATA transcription factor 4
SwissprotO497418e-68GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A438BWC06e-81A0A438BWC0_VITVI; GATA transcription factor
STRINGVIT_15s0021g02510.t013e-81(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.15e-67GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]