PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0021s0117.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 280aa MW: 30205 Da PI: 4.3046 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 82 | 132 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+ +++g Kalax.0021s0117.1.p 82 STYRGVRKRA-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAAMAIKG 132 56*****887.**********843...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.19E-31 | 82 | 140 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-21 | 82 | 141 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.092 | 83 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.9E-37 | 83 | 146 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-32 | 83 | 141 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-12 | 83 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 84 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 106 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDELTQSHLQ SVSLPPPPKI HSSTSSSSSS TDSMASSYAD QIAISNSSEC SAAENGAATG 60 ATVSAETESL SKRRRDIDEK HSTYRGVRKR AWGKWVSEIR EPRKKSRIWL GTYPTAEMAA 120 RAHDVAAMAI KGRSAVLNFP QLADRLPRPA SQCPKDIQAA AAEAAASTFE TTGEEEEEAT 180 HSISASSSLE SLLEHSNSTA QTDQLWEDYL FDLPELEAVG GDAFYDLPDL FEEDGGMSGA 240 GDLSSLYSSA WQLAGAATND AFRVEDPILW DYNNYLIDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-19 | 75 | 141 | 6 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q8LBQ7 | 2e-52 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A371HXZ5 | 1e-58 | A0A371HXZ5_MUCPR; Ethylene-responsive transcription factor ERF034 (Fragment) | ||||
STRING | XP_009771308.1 | 4e-56 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0021s0117.1.p |
Publications ? help Back to Top | |||
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