PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0020s0128.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 322aa    MW: 35032.2 Da    PI: 9.3536
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0020s0128.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.22e-29152210158
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                          ++Dgy+WrKYGqK+ +++++pr+Y++C++a +C+vkkkv+rsaed+++++ tY geHnh
  Kalax.0020s0128.1.p 152 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApNCQVKKKVQRSAEDQTMLVATYDGEHNH 210
                          58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-29143213IPR003657WRKY domain
PROSITE profilePS5081125.717147213IPR003657WRKY domain
SuperFamilySSF1182908.24E-25149213IPR003657WRKY domain
SMARTSM007741.9E-33152212IPR003657WRKY domain
PfamPF031066.7E-24153210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEPSAWVDSS LSLALNLNPH FHSHAAPSKP QIKKEEDLAE ELSRVSSENR KLTQMLTAMY  60
ENYSALQTQF ADLMQRTSAT SATATKRKSP ESGGDGAQTD QSSSSSGDES HVFKKPRDNS  120
CGGRVVATGI IRRKPSSKIL VRTDKSDTSL IVKDGYQWRK YGQKVTRDNP CPRAYFKCSF  180
APNCQVKKKV QRSAEDQTML VATYDGEHNH LPPSELEHGS QRSSNLVPAA TNSVSSSTVS  240
PSKPTVTLDL IQPVEEARLN NRTGLGAVEG ENNRRPVFQQ IIVEQMASSL TNDPGFKAAV  300
AAAISGRMME SSNGSMVGKW L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-191512141678Probable WRKY transcription factor 4
2lex_A4e-191512141678Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019054278.13e-87PREDICTED: probable WRKY transcription factor 40 isoform X2
TrEMBLA0A1U8Q6526e-86A0A1U8Q652_NELNU; probable WRKY transcription factor 40 isoform X2
STRINGXP_010265617.13e-84(Nelumbo nucifera)
STRINGXP_010275778.19e-85(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-59WRKY DNA-binding protein 40