PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0020s0127.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 319aa    MW: 35580.1 Da    PI: 8.772
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0020s0127.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.47e-29134193260
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                          +Dgy+WrKYGqK+ k+++ pr+Y+rC +a +Cpvkkkv+rs ed++++++ Yeg+Hnh+k
  Kalax.0020s0127.1.p 134 RDGYQWRKYGQKVTKDNPSPRAYFRCVMApTCPVKKKVQRSVEDETILVVSYEGHHNHSK 193
                          7**************************999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-27127193IPR003657WRKY domain
SuperFamilySSF1182905.23E-24129192IPR003657WRKY domain
SMARTSM007748.5E-31133193IPR003657WRKY domain
PfamPF031062.0E-23135191IPR003657WRKY domain
PROSITE profilePS5081124.409135194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDRVPAKSAR KIAMEEGAVE EMRKENARLR HIVKHLQAEA DGRRGKRGAA AAGMDDFDGD  60
QHLKHSCHLS TKGDDCYCYG ASSETTPHVD HEMVNGIKRP RMMPCLQVHT TSGNKAYQVF  120
VRTNDTRDKS LSVRDGYQWR KYGQKVTKDN PSPRAYFRCV MAPTCPVKKK VQRSVEDETI  180
LVVSYEGHHN HSKIGFEPPQ VLHLASSPTL DSSSTIHTTP TLTISGSNVN PFTKPTVTLD  240
LSLSGNHQFS NNNKDQETPT SSKFTPSFDS QNLFEKWDKM NGEFIGEYVA SLTRDPNFSM  300
ALAMAVVRSM PDMSTRPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-171331911471WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A438FZA72e-52A0A438FZA7_VITVI; WRKY transcription factor 18
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.19e-38WRKY DNA-binding protein 40