PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0019s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 301aa    MW: 33485.1 Da    PI: 6.2845
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0019s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.48e-25135196159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +dDg +WrKYGqK++ +s+fprsY+rC+++   gC ++k+v++s+++p +  +tY g+H+++
  Kalax.0019s0018.1.p 135 VDDGQAWRKYGQKTILNSPFPRSYFRCAHKtnqGCLATKQVQQSRSEPPLYSVTYDGHHTCT 196
                          58*************************9988889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-25125196IPR003657WRKY domain
PROSITE profilePS5081123.043130193IPR003657WRKY domain
SuperFamilySSF1182907.85E-24133196IPR003657WRKY domain
SMARTSM007743.1E-37135197IPR003657WRKY domain
PfamPF031061.1E-24136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSLRNGQQSL SSSTTKIKIT RAIEDELNAG HKSALLLRHC LLHADSISID DNETQGRRIL  60
PELLENIILS FENSIAKLDD SQDHHQKSEE EVSAKWEEDS GESCKQRASQ RKGRRGCYKR  120
RKGSQSWTKQ VPALVDDGQA WRKYGQKTIL NSPFPRSYFR CAHKTNQGCL ATKQVQQSRS  180
EPPLYSVTYD GHHTCTHNLK SPSLFVADST ADRPSVLLSF SNPAESSDQY PGRPLFGSPP  240
SSDYMLSPES FAAAFDQGMA SNASSNCSDL EGMEFMNHHE VGVGMCATDF DDLMKLEEFD  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-19135195868OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.17e-28WRKY DNA-binding protein 70