PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0018s0044.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 255aa MW: 28907 Da PI: 6.522 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.9 | 8.5e-26 | 34 | 84 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqvtfskRr g++KKAeEL vLCda+v +++fsstgk +eys+ Kalax.0018s0044.1.p 34 KKIDNTTARQVTFSKRRRGLFKKAEELAVLCDADVGLVVFSSTGKCFEYSN 84 68***********************************************95 PP | |||||||
2 | K-box | 41.6 | 5.3e-15 | 120 | 199 | 20 | 99 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++kL +e+ + + +R++ Ge+Le + +++LqqLe+ Le +l++i ++K ++++i el +k +l een+ Lr++++ Kalax.0018s0044.1.p 120 NYTKLSQEVAEKSSLLRRYRGENLEGMGIEDLQQLEKCLEAGLSRIIETKGGKIMREICELENKGMRLMEENEVLRQQVA 199 688999999999999**************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.8E-36 | 26 | 85 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.441 | 26 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.09E-36 | 27 | 102 | No hit | No description |
PRINTS | PR00404 | 1.2E-25 | 28 | 48 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 28 | 82 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.37E-29 | 28 | 97 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.6E-25 | 35 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-25 | 48 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-25 | 63 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.924 | 114 | 204 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.0E-14 | 120 | 198 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048438 | Biological Process | floral whorl development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000900 | Molecular Function | translation repressor activity, nucleic acid binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSVNSMDFFK KNVPHRLERE KRVSEMAREK IQIKKIDNTT ARQVTFSKRR RGLFKKAEEL 60 AVLCDADVGL VVFSSTGKCF EYSNCGMQQI LERHHLQSKN LEKLQQPAPS LELQLVEDVN 120 YTKLSQEVAE KSSLLRRYRG ENLEGMGIED LQQLEKCLEA GLSRIIETKG GKIMREICEL 180 ENKGMRLMEE NEVLRQQVAL IPDVYIPHRA NSENRMCEDG QSSESVTNLC ISGGASQDYE 240 SSDISLRLGL PYSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-17 | 26 | 94 | 1 | 69 | MEF2C |
5f28_B | 2e-17 | 26 | 94 | 1 | 69 | MEF2C |
5f28_C | 2e-17 | 26 | 94 | 1 | 69 | MEF2C |
5f28_D | 2e-17 | 26 | 94 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00272 | DAP | Transfer from AT2G22540 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021662492.1 | 1e-107 | MADS-box protein SVP | ||||
Swissprot | Q9FVC1 | 4e-96 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A2I4QQS2 | 1e-106 | A0A2I4QQS2_HEVBR; HbMADS-box protein | ||||
STRING | VIT_00s0313g00070.t01 | 1e-106 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-98 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0018s0044.1.p |