PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0017s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 309aa MW: 33730 Da PI: 7.0268 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ l+ +++q+G g+W++ ++ g+ R++k+c++rw +yl Kalax.0017s0007.1.p 15 KGPWSPEEDQVLISYITQHGHGRWRALPKLAGLLRCGKSCRLRWTNYL 62 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.6e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++l ++++ lG++ W++Ia+ ++ gRt++++k+ w+++l Kalax.0017s0007.1.p 68 RGPFTEEEEKLVIQLHGILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 113 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 6 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.095 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.44E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.78E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.764 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-26 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.51E-11 | 70 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MGKKRPCCEK NGLKKGPWSP EEDQVLISYI TQHGHGRWRA LPKLAGLLRC GKSCRLRWTN 60 YLRPDIKRGP FTEEEEKLVI QLHGILGNRW AAIAAQLPGR TDNEIKNLWN THLKKRLLCM 120 GIDPQTHEPF VTCYGPALAP AAPPSTRHMA QWESARLEAE ARLSRESLLF GAPTPPSDNP 180 SDHFLRLWNS EVGAAFRLQA KGAVASSTSS SHHSQLSSTL KGCCDSVSGT TTEMASTTVT 240 KIQKEEIDTD AVAAAGSASS SSDELDDSSD STLQLLMDYP FNNDMSFLTD HISDYSSFPS 300 MCPGSSGP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 13 | 117 | 5 | 108 | B-MYB |
1h8a_C | 3e-30 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021653076.1 | 1e-136 | transcription factor MYB41-like | ||||
Swissprot | Q9M2D9 | 1e-119 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | D7UC60 | 1e-134 | D7UC60_VITVI; Uncharacterized protein | ||||
STRING | VIT_15s0046g03190.t01 | 1e-135 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61250.1 | 1e-112 | myb domain protein 17 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0017s0007.1.p |