PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0016s0161.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 333aa    MW: 36818.2 Da    PI: 5.8977
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0016s0161.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.2e-18223257135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C +C+t kTp+WR gp g+ktLCnaCG++y++ +l
  Kalax.0016s0161.1.p 223 CLHCQTDKTPQWRTGPMGPKTLCNACGVRYKSGRL 257
                          99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-16217267IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.308217253IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.9E-15220255IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.66E-15220281No hitNo description
CDDcd002025.12E-15222269No hitNo description
PROSITE patternPS003440223248IPR000679Zinc finger, GATA-type
PfamPF003206.9E-16223257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEATPPAAPA APEYLAYDGA AAAVAPEAMR GGSDVTNNKS VVTDQFLVEE FFDFSNEEDE  60
ELVLSDNANA NEFQSIKAES GSSVTLLVDS SCNSSLGDFG NSNLTSELCV PYDDLAELEW  120
VSTFAEESFS SEDIEKLQLI SGMSARPEEA ASATHGHRPD PNPPKYRPEI LVPGKARSKR  180
PRTAPGSWSS RILLVSDDPK PVRKPKPVKK YGAEYLPVDG RKCLHCQTDK TPQWRTGPMG  240
PKTLCNACGV RYKSGRLVPE YRPASSPTFV QTKHSNSHRK VLELRRQKEM MMGTHQQHQR  300
YLEQYRSMSF DGSNGEDYLI HRRMGPDFGQ LI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596902.11e-108GATA transcription factor 12-like
SwissprotO826321e-82GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A200RC111e-108A0A200RC11_9MAGN; GATA transcription factor
STRINGcassava4.1_010069m1e-107(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-77GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]