PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0014s0197.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23373.7 Da PI: 4.8263 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.5 | 9.7e-43 | 36 | 135 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe +r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l Kalax.0014s0197.1.p 36 PCAACKILRRRCADKCVLAPYFPPTEPHKFTIAHRVFGASNIIKFLQELPEAQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSEL 125 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +a+la+ ++e Kalax.0014s0197.1.p 126 QAQLAKSQAE 135 *****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.219 | 35 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.4E-43 | 36 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEHTERTSTT PSPTSSLTSS PPSSPSQATT TVIMSPCAAC KILRRRCADK CVLAPYFPPT 60 EPHKFTIAHR VFGASNIIKF LQELPEAQRA DAVSSMVYEA SARIRDPVYG CAGAICQLQK 120 QVSELQAQLA KSQAEIVNMQ AQQAQLVALI CMEMSSVQPS KTTVKTAPDQ SFDCEGFIGS 180 PLVDDFYGGL GFEIESDGMG SLGWETPLWP DVMMTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-42 | 29 | 138 | 4 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-42 | 29 | 138 | 4 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597159.1 | 1e-86 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 2e-72 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | G7IKN3 | 3e-85 | G7IKN3_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | AES67410 | 4e-86 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 3e-74 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0014s0197.1.p |