PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0013s0270.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 346aa MW: 38102.4 Da PI: 7.7065 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.8 | 5.8e-14 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l+d v++ G g+W +Ia ++ Rt k+c++rw + Kalax.0013s0270.1.p 55 KGPWSPEEDSCLKDFVTRNGVGRWGLIAGELD--RTSKSCRLRWCNQ 99 79*****************************8..**********985 PP | |||||||
2 | Myb_DNA-binding | 39.2 | 1.6e-12 | 107 | 150 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++T Ede+++ ++ G++ W+ Ia+ + +Rt++q+k+rw++ Kalax.0013s0270.1.p 107 GPFTRKEDEIIISMYEERGSK-WAQIAKALE-NRTDNQVKNRWNSN 150 89*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.488 | 50 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-27 | 53 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-12 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-12 | 55 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-20 | 56 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.42E-10 | 57 | 98 | No hit | No description |
SMART | SM00717 | 4.9E-11 | 105 | 153 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.046 | 106 | 155 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.4E-11 | 107 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.09E-9 | 108 | 151 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-21 | 108 | 153 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MVLINNSHLN LLDDMELSHL VNLIASNSNV DLNQDADEDQ NNNSSDEHER PNGRKGPWSP 60 EEDSCLKDFV TRNGVGRWGL IAGELDRTSK SCRLRWCNQL SPDIYHGPFT RKEDEIIISM 120 YEERGSKWAQ IAKALENRTD NQVKNRWNSN LSKVHRRSHK KVKSVKGSRA NPIRGNSKGS 180 RRPASFKSAT ARPAPTSVSI STAGPFADQV SPTASLKISE ARQFPGSRYR DPASLYPPPA 240 PAAYPDNSAP FACVEAYLPP AFVTPAAHFA SQVHQPANPS PSPAPAFNHL TSLSLFPPGH 300 ETDDVNYLNQ FPDHPAPLEN WTGLMEEIIG VDMEQANGAG RKHTK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 51 | 153 | 3 | 106 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 1e-30 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0013s0270.1.p |