PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0013s0215.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

DBB

Protein Properties

Length: 291aa MW: 31412.3 Da PI: 6.1565

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0013s0215.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.7	3.6e-06	4	34	5	35
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ +++ ++ +C ++ lC++C H+ Kalax.0013s0215.1.p 4 QCDVCNKDGASVYCPADEAALCASCDYGVHH 34 7****99***************99974 PP
2	zf-B_box	29.6	1.4e-09	54	97	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 ++++C+ +++k++ lfC++++ lC dC ++H H+ Kalax.0013s0215.1.p 54 DAPYCDICQDKRAFLFCQQDRAILCSDCDASIHAAnqltqrhHR 97 5789*****************************65667777555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.196	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.96E-4	3	33	No hit	No description
SMART	SM00336	7.6E-5	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.2E-14	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.324	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.7E-7	55	95	IPR000315	B-box-type zinc finger
CDD	cd00021	9.96E-10	56	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MKIQCDVCNK DGASVYCPAD EAALCASCDY GVHHANKLAS NHYRFNLLTP SAKDAPYCDI 60 CQDKRAFLFC QQDRAILCSD CDASIHAANQ LTQRHHRFLL TGVKLSAKTN LYAAAGSDPV 120 PDFESHPSAA NAKKNLAASQ PAAHKTCSCC DQLMGDPCST SSISEYLMET LPGWRVDDLL 180 DSSSAPYAFS KQYDDGLLLP FMDADVLGHS DLMGSLFPES ASTWASQVPS ISPPFPQVPH 240 YSSSYAPVAC KETTSMKATD SRKSLIDDGF TVPQMISPQS SVGTKRSRLF *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017685.2	8e-88	PREDICTED: B-box zinc finger protein 21
TrEMBL	A0A061FC44	1e-85	A0A061FC44_THECC; Salt tolerance 2, putative isoform 1
STRING	EOY14910	2e-86	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	2e-70	salt tolerance homolog2

Link Out ? help Back to Top
Phytozome	Kalax.0013s0215.1.p