PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0013s0175.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 30700.7 Da PI: 6.706 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.7 | 7.4e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l+++ + +G g W+ +++ g++R++k+c++rw++yl Kalax.0013s0175.1.p 14 KGAWTAEEDRMLAEYMEVHGHGKWRNVPNVTGLKRCRKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.1 | 1.8e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+v+++k+lG++ W++Ia +++ gRt++++k++w++yl Kalax.0013s0175.1.p 67 RGNISPDEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTYL 112 7899******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.006 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.87E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.13E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.708 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.31E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGRRPCCVKE GLNKGAWTAE EDRMLAEYME VHGHGKWRNV PNVTGLKRCR KSCRLRWLNY 60 LRPDIKRGNI SPDEEDLIVR LHKLLGNRWS LIAGRLPGRT DNEVKNYWNT YLSKKIRSSN 120 KNSTKKKQQQ PPFHVAQQTS MNHQVLLEEE KSPLVVTASE DLLKINSNYM LNTNCSQMVG 180 SGSNEDCLTL EEIIEFAEFG GGKTQQNNIV VGADAGSSST VQHDSFCLLG PESNLAWPGH 240 KDGHWDDWLL DAMAADAEDW LPDCDGSMLG IF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027182618.1 | 8e-69 | myb-related protein Zm38-like | ||||
TrEMBL | A0A438K6U7 | 1e-67 | A0A438K6U7_VITVI; Transcription factor MYB3 | ||||
STRING | GLYMA13G16890.1 | 6e-67 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06180.1 | 4e-56 | myb domain protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0013s0175.1.p |