PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0013s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 309aa    MW: 33779 Da    PI: 7.2492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0013s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd+ l+ +++q+G g+W++ ++  g+ R++k+c++rw +yl
  Kalax.0013s0019.1.p 15 KGPWSPEEDQVLISYITQHGHGRWRALPKLAGLLRCGKSCRLRWTNYL 62
                         79******************************99************97 PP
2Myb_DNA-binding50.35.6e-1668113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T+eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Kalax.0013s0019.1.p  68 RGPFTEEEEKLVIQLHGILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 113
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-25665IPR009057Homeodomain-like
PROSITE profilePS5129417.0951062IPR017930Myb domain
SuperFamilySSF466893.44E-3012109IPR009057Homeodomain-like
SMARTSM007172.4E-131464IPR001005SANT/Myb domain
PfamPF002494.4E-151562IPR001005SANT/Myb domain
CDDcd001671.06E-101762No hitNo description
PROSITE profilePS5129425.76463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-2666117IPR009057Homeodomain-like
SMARTSM007175.9E-1567115IPR001005SANT/Myb domain
PfamPF002495.2E-1568113IPR001005SANT/Myb domain
CDDcd001672.70E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGKKRPCCEK NGLKKGPWSP EEDQVLISYI TQHGHGRWRA LPKLAGLLRC GKSCRLRWTN  60
YLRPDIKRGP FTEEEEKLVI QLHGILGNRW AAIAAQLPGR TDNEIKNLWN THLKKRLLCM  120
GIDPQTHEPF VTCYGPALAP AAPPSTRHMA QWESARLEAE ARLSRESLLF GAPTPPSDNP  180
SDHFLRLWNS EVGAAFRFQA KRAGASSTSS SHHSQLSSTL KGCCDSVSGT TTEMASTAVT  240
KIQKEEMDTD AVAAAGSASS SSDELDDSSD SALQLLMDYP FNNDMSFLTD HISDYSSFPS  300
MCPGSSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30131175108B-MYB
1h8a_C3e-301311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661750.11e-137PREDICTED: myb-related protein 308
RefseqXP_010661751.11e-137PREDICTED: myb-related protein 308
SwissprotQ9M2D91e-120MYB17_ARATH; Transcription factor MYB17
TrEMBLD7UC601e-136D7UC60_VITVI; Uncharacterized protein
STRINGVIT_15s0046g03190.t011e-136(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-111myb domain protein 17