PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0010s0159.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 274aa    MW: 30367.4 Da    PI: 6.5036
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0010s0159.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-152269148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd  l++++   G g+W+  a++ g++Rt+k+c++rw++yl
  Kalax.0010s0159.1.p 22 RGPWTVEEDTMLIHYISCNGDGRWNMLAKCAGLKRTGKSCRLRWLNYL 69
                         89********************************************97 PP
2Myb_DNA-binding51.22.9e-1675118146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ +++E++l++++++++G++ W++Ia++++ gRt++++k++w++
  Kalax.0010s0159.1.p  75 RGNLSPQEQLLILELHAKWGNR-WSKIAQHLP-GRTDNEIKNFWRT 118
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6151769IPR017930Myb domain
SuperFamilySSF466899.77E-3020116IPR009057Homeodomain-like
SMARTSM007172.3E-122171IPR001005SANT/Myb domain
PfamPF002491.1E-132269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-212376IPR009057Homeodomain-like
CDDcd001671.05E-92469No hitNo description
PROSITE profilePS5129424.68470124IPR017930Myb domain
SMARTSM007176.6E-1574122IPR001005SANT/Myb domain
PfamPF002492.0E-1575118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2377123IPR009057Homeodomain-like
CDDcd001671.28E-1179118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MACKSSDGKG SMYEEDEAEL RRGPWTVEED TMLIHYISCN GDGRWNMLAK CAGLKRTGKS  60
CRLRWLNYLK PDVKRGNLSP QEQLLILELH AKWGNRWSKI AQHLPGRTDN EIKNFWRTRV  120
QKQALQLSLE TPDNQQLAAS AFSQSNSPAS SSAMSMSPRS NWHNTFGCNS VTPTLGESSS  180
SSLHHQTPTN PSNVAYGNNV CISSSSPFHH EDCYYVDNSQ AADAGGGFGS VDAGVTATSG  240
YVGRRDWVAD DEVENGMWNN TDELWQFRYS SSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-24191241105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-241912424128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229265.19e-78PREDICTED: transcription factor MYB24-like
SwissprotQ9C9G75e-69MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A314KLS42e-76A0A314KLS4_NICAT; Transcription factor myb108
STRINGXP_009797951.11e-76(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-69myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]