PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0009s0235.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 305aa    MW: 33843.4 Da    PI: 9.6352
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0009s0235.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.12.4e-18225258134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++C  tkTp+WR gp g+ktLCnaCG+++++ +
  Kalax.0009s0235.1.p 225 CTHCDITKTPQWRAGPMGPKTLCNACGVRFKSGR 258
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.754219255IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-15219269IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-14222282No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14223256IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.22E-13224273No hitNo description
PROSITE patternPS003440225250IPR000679Zinc finger, GATA-type
PfamPF003205.4E-16225258IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MASVSHSHSN LFSFGLGRAP PQRRMAEPIF NDDDLNRFLD QFDDLSDPEL SVADNLNDLF  60
PAIWTEPSYL ELNPVPVPNG TRSEIISPDL SAGMGSASNL PLNNESRSFI PVSVLESCRT  120
GPFIDHGIRM PAALTVPPVQ GRARTKRHRP PTFNPRPSAL PTTWPLPRHL PDNMSGSLEK  180
ISNAEMHRNV RKSKKLRVSS PNEIHQNQNK DPNFPPLQVE ADRKCTHCDI TKTPQWRAGP  240
MGPKTLCNAC GVRFKSGRLF PEYCPAASPT FSPTRHSNSH KKVLEMRKNI EKSTDHAHVT  300
VKAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683872.18e-48PREDICTED: GATA transcription factor 8
STRINGXP_010683872.13e-47(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-36GATA family protein