PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0006s0245.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 210aa MW: 23852.4 Da PI: 6.0925 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.5 | 4e-34 | 13 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk.. 88 lppGfrF P+deelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ +e ++wyfFs+++ + + r t++gyWk+ + Kalax.0006s0245.1.p 13 LPPGFRFYPSDEELVVHFLRRKASLLPCHP-DVIPDLELYPYDPWQLRGKALEEGNQWYFFSRKQPPS-----HYRRTNNGYWKKAHHad 96 79*************************999.99**************977777899******997754.....4566899***9765422 PP NAM 89 ..dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++s k++l+glk+ vf+ g+ap+g+ t+W+m+ey+l Kalax.0006s0245.1.p 97 rqEQTIFS-KQRLIGLKRHYVFHIGEAPSGVMTNWIMDEYSL 137 22667777.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-46 | 10 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.192 | 13 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-22 | 14 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGEDGSSNGT RRLPPGFRFY PSDEELVVHF LRRKASLLPC HPDVIPDLEL YPYDPWQLRG 60 KALEEGNQWY FFSRKQPPSH YRRTNNGYWK KAHHADRQEQ TIFSKQRLIG LKRHYVFHIG 120 EAPSGVMTNW IMDEYSLSSD TASSSSKRRG TKTERSKWVV CRVYEQSDGD DEEHGGGSGG 180 GGGGIELSCL DEVFLSLEDE LDDISYPSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-34 | 13 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-34 | 13 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-34 | 13 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-34 | 13 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-34 | 13 | 166 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-34 | 13 | 166 | 17 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006494065.1 | 4e-73 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 9e-59 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A067EYC8 | 1e-70 | A0A067EYC8_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A072UPE9 | 1e-70 | A0A072UPE9_MEDTR; NAC transcription factor-like protein | ||||
TrEMBL | A0A2H5PUU0 | 1e-70 | A0A2H5PUU0_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SY37 | 1e-70 | V4SY37_9ROSI; Uncharacterized protein | ||||
STRING | XP_006494065.1 | 1e-72 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 8e-56 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0006s0245.1.p |
Publications ? help Back to Top | |||
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