PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0215.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 405aa    MW: 43701.2 Da    PI: 6.2261
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0215.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.37.9e-34191248158
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                          ldDgy+WrKYGqK vk+s+fprsYYrCts++C vkk+vers+ed ++v++tYeg+H+h
  Kalax.0006s0215.1.p 191 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSPSCAVKKRVERSSEDSTIVVTTYEGQHTH 248
                          59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-34176250IPR003657WRKY domain
SuperFamilySSF1182901.09E-28183249IPR003657WRKY domain
PROSITE profilePS5081131.433186251IPR003657WRKY domain
SMARTSM007748.2E-40191250IPR003657WRKY domain
PfamPF031062.7E-26192248IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MERAEDQSGK IDSLLMMNPS SFADQIPATS FTLSGLFDTP PFTASPAPLP ASNSYDIDKS  60
GGGSVLGFSD LLGFQDYCYG ASLFDLIQTS PPLAPVAMAP SPASTIHETS EVVNGPMTPN  120
SSSISMSSNE AAAAANEEQS KDCQDIIGEN NGQEDQDRDK TKKQLKPKKK NQKKEKEPRF  180
AFMTKSEVDH LDDGYRWRKY GQKAVKNSPF PRSYYRCTSP SCAVKKRVER SSEDSTIVVT  240
TYEGQHTHLS PVMARGSITN SLLHHHLETT NPNNNNNASN SCFVLGGSSP APPSFAVPQQ  300
PLFHHNHHHS QSPSSLFNNN ATPMVPSALS SFIDNNPSTA PSSHTPSPSL GPNPFFQQRH  360
FCPSPAADDQ HAAAPATAGG SSSCLMRDDG LLQDMIQRSD LKEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-261842511077Probable WRKY transcription factor 4
2lex_A8e-261842511077Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279385.18e-74PREDICTED: probable WRKY transcription factor 48
TrEMBLA0A438GHD02e-72A0A438GHD0_VITVI; WRKY transcription factor
TrEMBLD7SYJ22e-72D7SYJ2_VITVI; WRKY transcription factor
STRINGVIT_05s0077g00730.t013e-73(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-40WRKY DNA-binding protein 23