PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0047.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 227aa    MW: 24983.3 Da    PI: 9.4157
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.51.7e-19853147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg+W+++Ed  lv++v+q+G+++W+ I++ ++ gRt+k+c++rw + 
  Kalax.0006s0047.1.p  8 RGSWSPQEDATLVKLVQQHGPRNWSMISAGIP-GRTGKSCRLRWCNQ 53
                         89******************************.***********985 PP
2Myb_DNA-binding54.72.4e-1762104347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++++ Ed+++ +a++ +G++ W+tIar+++ gRt++ +k++w++ 
  Kalax.0006s0047.1.p  62 PFSPSEDDIITRAHAIHGNR-WATIARMLP-GRTDNAIKNHWNST 104
                          79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.085358IPR017930Myb domain
SuperFamilySSF466891.95E-307101IPR009057Homeodomain-like
SMARTSM007172.2E-15756IPR001005SANT/Myb domain
PfamPF002494.6E-18853IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-24960IPR009057Homeodomain-like
CDDcd001673.34E-151052No hitNo description
SMARTSM007179.6E-1659107IPR001005SANT/Myb domain
PROSITE profilePS5129419.56659109IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2261108IPR009057Homeodomain-like
PfamPF002491.4E-1462104IPR001005SANT/Myb domain
CDDcd001673.29E-1362105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAESEAVRGS WSPQEDATLV KLVQQHGPRN WSMISAGIPG RTGKSCRLRW CNQLSPSVHH  60
RPFSPSEDDI ITRAHAIHGN RWATIARMLP GRTDNAIKNH WNSTLKRRRT AHSSSDSLEH  120
GFKRMRRTSS VSSHPPQLNI SGGADDEDSG AALLETVLTL SPPGECLPPP DEKKGLALAK  180
EETCLMKLMQ KMIAAEVRNY IDQLRAQGGL GTLLLHSAVL DHHHHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-3851081104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866980.11e-80transcription factor MYB77-like
TrEMBLA0A314L8L32e-78A0A314L8L3_NICAT; Transcription factor myb44
STRINGEMJ223105e-79(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-53myb domain protein 73