PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 610aa    MW: 67797.6 Da    PI: 5.4265
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.87.1e-074184521655
                          HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +N++f+ L++l+P++      K +K++ L  ++ Y+k+L+
  Kalax.0006s0006.1.p 418 LNERFSALQSLIPSN-----DKADKVTLLDATISYLKELE 452
                          8*************8.....7****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-507190IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.211402451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-5406457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-10417468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-10418464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.80E-7418456No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MGGSEKLRKQ LALAARCNQW SYAIYWSISI TQPSVLEWGS GYYGGDIKTR KTTQFEELNT  60
DMFNSKRSDQ LRELYESLVA GESNSQARRP STALSPEDLT DAEWYYLVCM SFVFNIGQGL  120
PGRTFEVGQP IWLCNAHLAE SQVFVRSLLA KSASIQTVVC FPFSGGVVEI GITELVPEDM  180
NLIERIKALF LDNFRPQSTV PDTSFPSGLL NYDMELAGVE PDHDYPEANL DPIVECKELD  240
SLSTYDSASN VAADQLADSF MLTDGASQVQ SWHFADEDFS NCVHHSFNSS NCISQTFALS  300
AKARLSPKIE NLCEHHIPCP MERTKLESPD DLHYQGVIST LLKNSDLLDL DPRIGCCKKG  360
SSFVKWSRVG RAGSSWSSNS MSQVMLRKVL FEVGRNTGCA PVDRTEAVDR YEHSLDVLNE  420
RFSALQSLIP SNDKADKVTL LDATISYLKE LEKRVEKLES SKESTYLLNT PMATKPQVTV  480
ERTSDNYGNG TNRTSNKNKP STNKRKASYI DQVEPQNIAK TSRDNSTDVI CVSMVDNNVM  540
IEMRCCWREC LLFKVMDAMS GLGLDSHMVQ SSTSANGILQ LTIKSKFKGS GCPSVGVIRQ  600
KLQRILAQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-16819012192Transcription factor MYC3
4rqw_B1e-16819012192Transcription factor MYC3
4rs9_A1e-16819012192Transcription factor MYC3
4yz6_A1e-16819012192Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040249.20.0PREDICTED: transcription factor EGL1
TrEMBLA0A061GCJ10.0A0A061GCJ1_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOY247500.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-146bHLH family protein