PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0005s0218.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 644aa    MW: 73610.5 Da    PI: 7.5627
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0005s0218.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08465505239
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 
                          ++W +eE ell ++v+++++g   +W+ I++++g+gR+  +
  Kalax.0005s0218.1.p 465 KPWGKEEIELLRKGVQKYPKGtsrRWEVISEYIGTGRSVDE 505
                          69**********************************99765 PP
2Myb_DNA-binding28.73e-09586630345
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                           W++  ++ l++a k ++++   +W+++a  ++ g+t +qck ++ 
  Kalax.0005s0218.1.p 586 QWSAVQEKALIQALKTFPKEanqRWERVATAVP-GKTVNQCKKKFA 630
                          7********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.3E-2192199IPR001623DnaJ domain
SuperFamilySSF465652.22E-2095204IPR001623DnaJ domain
SMARTSM002715.7E-1597172IPR001623DnaJ domain
PROSITE profilePS5007618.39598180IPR001623DnaJ domain
CDDcd062571.04E-1298169IPR001623DnaJ domain
PfamPF002263.3E-1898177IPR001623DnaJ domain
PRINTSPR006251.2E-9103121IPR001623DnaJ domain
PRINTSPR006251.2E-9121136IPR001623DnaJ domain
PRINTSPR006251.2E-9152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
PROSITE profilePS512936.604462520IPR017884SANT domain
SuperFamilySSF466892.24E-7463507IPR009057Homeodomain-like
SMARTSM007171.9E-6463516IPR001005SANT/Myb domain
PfamPF002492.1E-7465506IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-5465506IPR009057Homeodomain-like
CDDcd001679.94E-5466506No hitNo description
PROSITE profilePS512939.369582637IPR017884SANT domain
SMARTSM007171.9E-8583635IPR001005SANT/Myb domain
SuperFamilySSF466893.36E-9584630IPR009057Homeodomain-like
PfamPF002496.1E-8586629IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-5586629IPR009057Homeodomain-like
CDDcd001672.46E-6587633No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MVPAKNTFRL ITYSEEIVNG EPIFVSSNCL PIKAWKYEPA GHAFHEAAMR LGGFFEEEQD  60
EEVEEQKPCS EKEQYMPSSG SYSTKSKKKS GTDSKEQDHY ALLNLSHLRY LATEEQIRKS  120
YRETALKYHP DKQAALLLSE ETEAGKQAKK DEIEAHFKAV QEAYEVLTDP VKRRIYDSTD  180
EFDDEIPTDC APQDFFKVFG PAFMRNGRWS VAQPVPSLGD DGAPLKEVDD FYNFWYGFKS  240
WREFPHADEY DLEQAESRDH KRWMERQNAK LSEKARKEEY VRIRSLVDNA YRRDPRILRR  300
KDEEKAEKQR KKQAKYLAKQ LEEEKAAKEA EEEKHRKEAE DKRAAEANAL QKKAKEKEKK  360
LLRKERSRLR ALSAAIVSHS QHSVTDDDME GLCMSLGMDD LKNLCDKLDG KETEDQAETL  420
RSILGRKAST ESDPRDEKKP LYQNGSVTQN GTVFLGGYVK KEKEKPWGKE EIELLRKGVQ  480
KYPKGTSRRW EVISEYIGTG RSVDEILKAT KSVLLQKPDS NKAFDSFLEK RKPSPSIQSP  540
LSTRDDVVDA TNCSSTVVNT SNTGVPEQKP ERATANGDPS SSDPDQWSAV QEKALIQALK  600
TFPKEANQRW ERVATAVPGK TVNQCKKKFA LLKESFRSKK SGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A8e-1919429720123Zuotin
5dje_B8e-1919429720123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A059BI980.0A0A059BI98_EUCGR; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-120DnaJ domain ;Myb-like DNA-binding domain