PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0005s0163.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 383aa MW: 42324.8 Da PI: 8.4384 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2.1e-05 | 217 | 236 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Kalax.0005s0163.1.p 217 FACSICTKTFNRYNNMQMHM 236 78*****************9 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 301 | 323 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+ksF k + ++H +++ Kalax.0005s0163.1.p 301 FMCRKCSKSFAVKGDWRTHEKNC 323 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.66E-5 | 208 | 240 | No hit | No description |
PROSITE profile | PS50157 | 10.45 | 217 | 244 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.27 | 217 | 239 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.6E-5 | 217 | 236 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 219 | 239 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.98E-6 | 283 | 321 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 297 | 321 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 56 | 301 | 321 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MRAIDHQGNS FYHVVEEAQS NGIMMSHSKQ SIISSLFQQS PPPTTFIEFK SPVPSASSSS 60 SASSSSNTQQ QPQMMAGPRF ADDHMRTSAL RCLPLLSKLM EDTSNNTPSS EAAIKDEQHE 120 EVDNSGGSFG IKRQGDDKVT VTLCIGLSTG SSTDYDLIKV YEDGVGSGAT DKRMGSSAVK 180 KRASCSLMDD CYTSSFNSES RFWIPTPVQI MVGPMQFACS ICTKTFNRYN NMQMHMWGHG 240 SEYRKGPDSL KGSQPAAMLR LPCYCCAPGC KNNINHPRAK PLKDFRTLQT HFKRKHGSKP 300 FMCRKCSKSF AVKGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIRSFGK GHSPYPPMEG 360 FELGDKECAM TGSSEEDEVS PT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015872349.1 | 1e-131 | zinc finger protein WIP3 | ||||
Swissprot | Q9SGD1 | 1e-114 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | B9HQX3 | 1e-129 | B9HQX3_POPTR; C2H2 family protein | ||||
STRING | XP_009342737.1 | 1e-130 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-114 | WIP domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0005s0163.1.p |
Publications ? help Back to Top | |||
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