PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0004s0329.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | YABBY | ||||||||
Protein Properties | Length: 161aa MW: 18555.1 Da PI: 10.0016 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 127.2 | 2.3e-39 | 40 | 142 | 65 | 170 |
YABBY 65 eslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafs 154 +s e +e+++e++ + ++++ ++ ++ e+l++ ++++++ +++PPekrqrvPs ynrfi+eeiqrika+nPdi+hr+afs Kalax.0004s0329.3.p 40 NSAAAESEQEREQEHHRIPTMMQIQQ---PKRVDEMLNTFSKQKTSLFASINKPPEKRQRVPSVYNRFIREEIQRIKAGNPDITHRQAFS 126 33333344444444444444333333...334445667777777777789**************************************** PP YABBY 155 aaaknWahfPkihfgl 170 aaaknWa+fP+ihfgl Kalax.0004s0329.3.p 127 AAAKNWAYFPHIHFGL 142 **************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.5E-36 | 44 | 142 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.56E-7 | 85 | 135 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MGALLVPPQP SSNHQYHPIH NPPPSLHQEE LYVVNTVMNN SAAAESEQER EQEHHRIPTM 60 MQIQQPKRVD EMLNTFSKQK TSLFASINKP PEKRQRVPSV YNRFIREEIQ RIKAGNPDIT 120 HRQAFSAAAK NWAYFPHIHF GLMPEELHQP VTKKPNLLSR * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315817.1 | 2e-36 | axial regulator YABBY 1-like | ||||
TrEMBL | D9ZJG4 | 4e-35 | D9ZJG4_MALDO; YABBY domain class transcription factor | ||||
STRING | XP_008364377.1 | 7e-36 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-35 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0004s0329.3.p |