PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0004s0316.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 336aa    MW: 37017.2 Da    PI: 7.2182
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0004s0316.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-172269148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd  lv +v+q+G  +W++++++ g+ R+ k+c++rw +yl
  Kalax.0004s0316.1.p 22 KGPWTPEEDISLVSYVQQHGASNWRAVPAKAGLLRCSKSCRLRWTNYL 69
                         79******************************99************97 PP
2Myb_DNA-binding48.42.1e-1575120148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T++E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Kalax.0004s0316.1.p  75 RGNFTEQEQKMIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 120
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3151769IPR017930Myb domain
SuperFamilySSF466895.39E-3019116IPR009057Homeodomain-like
SMARTSM007174.9E-132171IPR001005SANT/Myb domain
PfamPF002495.3E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-242376IPR009057Homeodomain-like
CDDcd001672.00E-102469No hitNo description
PROSITE profilePS5129424.32370124IPR017930Myb domain
SMARTSM007175.7E-1674122IPR001005SANT/Myb domain
PfamPF002491.3E-1475120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2477125IPR009057Homeodomain-like
CDDcd001671.69E-1177120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MARSPCCEDH SKSGGGAVGL KKGPWTPEED ISLVSYVQQH GASNWRAVPA KAGLLRCSKS  60
CRLRWTNYLR PGIKRGNFTE QEQKMIIHLQ ALLGNRWAAI ASYLPERTDN DIKNYWNTHL  120
KKKVIKHDQQ RLGLDGRDDG GFSLLSDSGT VAKGQWERRL QTDINLAKQA LSQALAVEKT  180
EHDPASDHTR DQLAGSSNTS LTCYSITPSP SPSHSPTTTT TYASSTANIS KLLDGWMTTV  240
KKKEPAVPGS AESSYTNQFD SNLNNYQFGN VMGASSSSED YDQFSNFMET KPYMETQVTL  300
LEKWLLVDDG SNSVNVAGGA TGMMFDQRDI DSLFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27161241108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258354.11e-100PREDICTED: myb-related protein 306
SwissprotP813923e-89MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A1U8A8R54e-99A0A1U8A8R5_NELNU; myb-related protein 306
STRINGXP_010258354.11e-100(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.12e-83myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]