PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0004s0169.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 268aa MW: 30340.8 Da PI: 6.794 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 32 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT eEd++l ++v+ +G+g+W++Ia++ g++R++k+c++rw +yl Kalax.0004s0169.1.p 32 RGLWTDEEDKILMEYVEVHGKGQWNRIAKKTGLKRCGKSCRLRWVNYL 79 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 61 | 2.6e-19 | 85 | 130 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++l+++++k+lG++ W++Ia +++ gRt++q+k++w+++l Kalax.0004s0169.1.p 85 RGNFTEEEEDLIIRLHKLLGNR-WSLIAGRVP-GRTDNQVKNYWNTHL 130 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.185 | 27 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.89E-31 | 30 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-15 | 31 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-17 | 32 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-25 | 33 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.72E-12 | 35 | 79 | No hit | No description |
PROSITE profile | PS51294 | 26.858 | 80 | 134 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-18 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-18 | 85 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 87 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.37E-14 | 87 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010053 | Biological Process | root epidermal cell differentiation | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0048629 | Biological Process | trichome patterning | ||||
GO:0090377 | Biological Process | seed trichome initiation | ||||
GO:0090378 | Biological Process | seed trichome elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MPLFELLVFA LHQSKRGEEM EGGGGVSHQY RRGLWTDEED KILMEYVEVH GKGQWNRIAK 60 KTGLKRCGKS CRLRWVNYLS PNVKRGNFTE EEEDLIIRLH KLLGNRWSLI AGRVPGRTDN 120 QVKNYWNTHL SKRNGSTKRP RTESYTPNPD TKSPACSKDS ETMTAGAFVS LDPLRNNTGS 180 TTENPEQETT AAAALTTVNN VLLDASFSLQ NADAFLADGQ PQHYASSSQT WRDQMEQQMQ 240 MSSYQSLLQF SDEFLQFDFG WSSLFSD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 32 | 133 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00538 | DAP | Transfer from AT5G40330 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010492291.1 | 7e-68 | PREDICTED: transcription factor WER-like isoform X1 | ||||
Refseq | XP_015578183.2 | 2e-67 | transcription factor WER, partial | ||||
Swissprot | Q9SEI0 | 4e-67 | WER_ARATH; Transcription factor WER | ||||
STRING | Aquca_002_00170.1 | 4e-67 | (Aquilegia coerulea) | ||||
STRING | XP_010492291.1 | 3e-67 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-68 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0004s0169.1.p |