PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0004s0050.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 285aa MW: 32084.3 Da PI: 5.0454

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0004s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3.1e-07	3	34	15	46
HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqk 46 v+++G+++W++I ++ ++Rt+k+c++rw + Kalax.0004s0050.1.p 3 HVNKYGPRDWSSIRSKGLLRRTGKSCRLRWVN 34 69*********888779*********87 PP
2	Myb_DNA-binding	43.2	9.1e-14	45	85	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++ eE+ + +++ +q+G++ W++I+ +++ gRt++++k++w Kalax.0004s0050.1.p 45 KFSLEEERIVIELQEQFGNK-WARISTYLP-GRTDNDVKNFWS 85 799***************.*****.*********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.623	1	36	IPR017930	Myb domain
SuperFamily	SSF46689	5.08E-21	2	84	IPR009057	Homeodomain-like
SMART	SM00717	24	2	38	IPR001005	SANT/Myb domain
Pfam	PF13921	5.1E-6	2	42	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.8E-12	2	43	IPR009057	Homeodomain-like
CDD	cd00167	1.33E-6	4	36	No hit	No description
PROSITE profile	PS51294	19.401	37	92	IPR017930	Myb domain
SMART	SM00717	4.8E-13	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-17	44	90	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-12	45	85	IPR001005	SANT/Myb domain
CDD	cd00167	5.82E-11	45	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MNHVNKYGPR DWSSIRSKGL LRRTGKSCRL RWVNKLRPNL KNGCKFSLEE ERIVIELQEQ 60 FGNKWARIST YLPGRTDNDV KNFWSSRKKR LARMLQAKHT SPSSPQPAKQ SNSGDTLQYL 120 PLTWEIANEA SSSTQVDEQL SCVDQSCEML LPPGLIDPCL IHYNPNLHPL EMMAPEKSMN 180 VDCPAADFPI QVPFAPMMPV LPVPLSPESQ ELVARLENGR LTHGFEQEDG TGSVDPEMMF 240 FQELPPQNSD VGGENNLAAP DSFFDDFPAD MFDHIESLPS PSNW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-21	1	90	39	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002273472.1	2e-83	PREDICTED: transcription factor MYB48
TrEMBL	D7SLV6	4e-82	D7SLV6_VITVI; Uncharacterized protein
STRING	VIT_15s0021g02040.t01	7e-83	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	5e-58	MYB family protein

Link Out ? help Back to Top
Phytozome	Kalax.0004s0050.1.p