PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0003s0292.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 169aa MW: 18854.2 Da PI: 7.509

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0003s0292.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.7	5.9e-14	28	88	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +l++ +r+q+NR +ArrsR RK++ ++ L v ++ +eN++ ++ ++++a++++e+ Kalax.0003s0292.1.p 28 DLRKRKRMQSNRDSARRSRMRKQQHLDDLMAQVNQIRKENHQIMTSISATNQQYASVEAEN 88 58999***************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.7E-20	26	90	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.4E-11	28	83	No hit	No description
PROSITE profile	PS50217	10.795	28	91	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.8E-11	29	88	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.41E-11	29	83	No hit	No description
CDD	cd14702	2.16E-20	31	82	No hit	No description
PROSITE pattern	PS00036	0	33	48	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MATSSGNSIS TAQIQSSGGG SEEVGVMDLR KRKRMQSNRD SARRSRMRKQ QHLDDLMAQV 60 NQIRKENHQI MTSISATNQQ YASVEAENSI LRAQMCELRQ RLQSLNQIIH CINTIAPQPP 120 AATSFDIGVF DYGFGDDDVL QTGLIDPWNN VGYLNQQPIM ASADMFRY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	49	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269\|PubMed:23461773}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074802.1	2e-52	bZIP transcription factor 11-like
Swissprot	C0Z2L5	6e-42	BZP44_ARATH; bZIP transcription factor 44
TrEMBL	A0A022R250	5e-49	A0A022R250_ERYGU; Uncharacterized protein
STRING	Migut.C00766.1.p	8e-50	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	2e-39	basic leucine-zipper 44

Link Out ? help Back to Top
Phytozome	Kalax.0003s0292.1.p

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]