PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0003s0055.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 189aa MW: 20586.4 Da PI: 8.3023

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0003s0055.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C k+F++ L H r+H Kalax.0003s0055.1.p 125 HECPVCYKVFKSGQALGGHKRSH 147 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.81E-9	3	26	No hit	No description
PROSITE profile	PS50157	9.91	4	31	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.1E-7	4	26	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.062	4	26	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.81E-9	120	147	No hit	No description
Pfam	PF13912	2.9E-13	125	147	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.12	125	147	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.286	125	147	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	127	147	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MEKHQCKLCA RRFGSGRALG GHMRSHFTIL PVPPKPHPSQ LSETETSSSS SYVLCGSRKK 60 RRSIEFGQAA VSSETSSSEE EDLAMWLMLL SRDKWVRKEC PAGIKREKVY LENGTGGGGD 120 DEKLHECPVC YKVFKSGQAL GGHKRSHLFS STSTAALANN TAWLIDLNLP APMEDGGDMS 180 HSHVPVLC*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024995382.1	4e-32	zinc finger protein ZAT1-like
Swissprot	Q39092	2e-27	ZAT1_ARATH; Zinc finger protein ZAT1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	5e-23	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Kalax.0003s0055.1.p

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003]