PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0003s0045.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 283aa    MW: 31877.8 Da    PI: 8.0225
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0003s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67.1e-18193227135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l
  Kalax.0003s0045.1.p 193 CSHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 227
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.3E-761281IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.622187223IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-17187237IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-14191251No hitNo description
Gene3DG3DSA:3.30.50.104.2E-14191225IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.17E-14192239No hitNo description
PfamPF003208.5E-16193227IPR000679Zinc finger, GATA-type
PROSITE patternPS003440193218IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDEFFRVDDL LNFSNDDHGL SSITSDHYDH QHQQFESTSE HMNHQLKSHF GGNNNLHRFN  60
NNSSFSSGTG RGAAGADSIG AHHFSYDFTD QLYVPNDDVA ELEWLSNFVD DSFTDFNTND  120
LTVTLMSRSH SSIPSAARSK RSRQRTWKAS TSLISSSPAP QTDRSRTKSK QGMNSMSEFV  180
DESSSSSSGV RRCSHCASEK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV  240
LTQHSNSHRK VMELRRQKEV TIKQQQQQGH VYHHTHDFQV CR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144KRSRQR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277959.13e-82PREDICTED: GATA transcription factor 4
SwissprotO497431e-64GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A438BWC02e-81A0A438BWC0_VITVI; GATA transcription factor
STRINGVIT_15s0021g02510.t011e-81(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-66GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]