PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0003s0029.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 310aa MW: 35101.9 Da PI: 8.5932

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0003s0029.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	148.4	3.5e-46	16	143	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrFhPt+eel+++yL+ ++gkkl + +vi ++iy++eP+ Lp ++k +e+ewyf+++rd+k a+g r+nr+t++g+Wkatg+d++ Kalax.0003s0029.1.p 16 LPGFRFHPTEEELLQFYLRSVISGKKLCA-DVIGFLNIYRHEPSALPGMAKIGEREWYFYVPRDRKRANGGRPNRTTETGFWKATGSDRR 104 59**********************999.99***********888999********************************* PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ ++++gl+ktLvfy+grap+g+ktdWvm+eyrl Kalax.0003s0029.1.p 105 IFSSasPKRVIGLRKTLVFYTGRAPRGSKTDWVMNEYRL 143 9777788**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.761	15	163	IPR003441	NAC domain
SuperFamily	SSF101941	9.55E-55	15	163	IPR003441	NAC domain
Pfam	PF02365	9.1E-24	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MSASDHMDEA RLELKLPGFR FHPTEEELLQ FYLRSVISGK KLCADVIGFL NIYRHEPSAL 60 PGMAKIGERE WYFYVPRDRK RANGGRPNRT TETGFWKATG SDRRIFSSAS PKRVIGLRKT 120 LVFYTGRAPR GSKTDWVMNE YRLADSSSNP DKADVVLCKI YRKATPLKVL EQRAAAEDEL 180 KWIKLQTGPS SPSSVSSQTE MMPFYDAELY DDPQPLIPKR EEEFNILDKV EPPRSQPDGA 240 ELNTVLTASS SSSSPSASSL TNSLKLPAGM DILPDLQVSK MNMDWTQDQF WTQFNSPWFR 300 SMTLNLIPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-44	17	165	22	170	NAC domain-containing protein 19
3swm_B	7e-44	17	165	22	170	NAC domain-containing protein 19
3swm_C	7e-44	17	165	22	170	NAC domain-containing protein 19
3swm_D	7e-44	17	165	22	170	NAC domain-containing protein 19
3swp_A	7e-44	17	165	22	170	NAC domain-containing protein 19
3swp_B	7e-44	17	165	22	170	NAC domain-containing protein 19
3swp_C	7e-44	17	165	22	170	NAC domain-containing protein 19
3swp_D	7e-44	17	165	22	170	NAC domain-containing protein 19
3ulx_A	7e-44	9	163	8	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022749220.1	1e-110	NAC domain-containing protein 35-like
Swissprot	Q10S65	4e-92	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2I4GCA4	1e-108	A0A2I4GCA4_JUGRE; NAC transcription factor 29-like
STRING	XP_004505672.1	1e-106	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	6e-88	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Kalax.0003s0029.1.p

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]